{
    "type": "genome",
    "identifier": "GCF_009388985.1",
    "organism": "Halioglobus maricola",
    "title": "Halioglobus maricola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INHA UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009388985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10929370",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2601894",
        "species_taxid": "2601894",
        "organism_name": "Halioglobus maricola",
        "infraspecific_name": "strain=IMCC14385",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/29",
        "asm_name": "ASM938898v1",
        "asm_submitter": "INHA UNIVERSITY",
        "gbrs_paired_asm": "GCA_009388985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/388/985/GCF_009388985.1_ASM938898v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4306437",
        "genome_size_ungapped": "4306437",
        "gc_percent": "56.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009388985.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3922",
        "protein_coding_gene_count": "3863",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-29",
    "dateModified": "2019-10-29",
    "datePublished": "2019-10-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halioglobus maricola"
        ],
        "sample_taxid": [
            "2601894"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.226 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4306437",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4306437",
        "N50 (bp)": "4306437",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.7",
        "Number of CDSs": "3897",
        "Average Protein Length": "342.3",
        "Coding Ratio (%)": "92.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halioglobus maricola",
                "strain": "strain=IMCC14385",
                "accession": "GCA_009388985.1",
                "taxid": 2601894,
                "species_taxid": 2601894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1435,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=NBRC 107739",
                "accession": "GCA_001983995.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5505,
                "matched_fragments": 546,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=S1-36",
                "accession": "GCA_002869505.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4211,
                "matched_fragments": 551,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halioglobus japonicus",
                "strain": "strain=KCTC 23429",
                "accession": "GCA_014652255.1",
                "taxid": 930805,
                "species_taxid": 930805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4044,
                "matched_fragments": 550,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella unica",
                "strain": "strain=GH4-78",
                "accession": "GCA_004354085.1",
                "taxid": 2547392,
                "species_taxid": 2547392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0725,
                "matched_fragments": 330,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella sediminis",
                "strain": "strain=U0301",
                "accession": "GCA_003457605.1",
                "taxid": 2283635,
                "species_taxid": 2283635,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0448,
                "matched_fragments": 349,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea aestuarii",
                "strain": "strain=S2-26",
                "accession": "GCA_008064635.1",
                "taxid": 1852021,
                "species_taxid": 1852021,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.582,
                "matched_fragments": 235,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea mediterranea",
                "strain": "strain=DSM 21924",
                "accession": "GCA_003402235.1",
                "taxid": 651086,
                "species_taxid": 651086,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4872,
                "matched_fragments": 239,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spongiibacter thalassae",
                "strain": "strain=KMU-166",
                "accession": "GCA_012272835.1",
                "taxid": 2721624,
                "species_taxid": 2721624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9412,
                "matched_fragments": 77,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens",
                "strain": "strain=DSM 6698",
                "accession": "GCA_003851905.1",
                "taxid": 587851,
                "species_taxid": 587753,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8173,
                "matched_fragments": 59,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens",
                "strain": "strain=LMG 1245",
                "accession": "GCA_001269575.1",
                "taxid": 587851,
                "species_taxid": 587753,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6381,
                "matched_fragments": 56,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens",
                "strain": "strain=NBRC 3521",
                "accession": "GCA_000813225.1",
                "taxid": 587851,
                "species_taxid": 587753,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5449,
                "matched_fragments": 54,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas tianxiuensis",
                "strain": "strain=BC-M4-5",
                "accession": "GCA_009834345.1",
                "taxid": 2497861,
                "species_taxid": 2497861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4983,
                "matched_fragments": 50,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sihuiensis",
                "strain": "strain=KCTC 32246",
                "accession": "GCA_900106015.1",
                "taxid": 1274359,
                "species_taxid": 1274359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.446,
                "matched_fragments": 67,
                "total_fragments": 1435,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009388985.1",
                "gtdb_species": "s__Halioglobus maricola",
                "ani": 100.0,
                "matched_fragments": 1435,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001983995.1",
                "gtdb_species": "s__Halioglobus japonicus",
                "ani": 79.5519,
                "matched_fragments": 545,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_004354085.1",
                "gtdb_species": "s__Halioglobus sp004354085",
                "ani": 78.083,
                "matched_fragments": 329,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003457605.1",
                "gtdb_species": "s__Halioglobus sediminis",
                "ani": 78.0448,
                "matched_fragments": 349,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009937575.1",
                "gtdb_species": "s__Halioglobus sp009937575",
                "ani": 77.6285,
                "matched_fragments": 201,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008064635.1",
                "gtdb_species": "s__Parahaliea aestuarii",
                "ani": 77.5957,
                "matched_fragments": 234,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002866825.1",
                "gtdb_species": "s__Halioglobus lutimaris",
                "ani": 77.5701,
                "matched_fragments": 243,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004745945.1",
                "gtdb_species": "s__Halioglobus sp004745945",
                "ani": 77.5023,
                "matched_fragments": 263,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003402235.1",
                "gtdb_species": "s__Parahaliea mediterranea",
                "ani": 77.4872,
                "matched_fragments": 239,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008370495.1",
                "gtdb_species": "s__Halioglobus sp008370495",
                "ani": 77.4524,
                "matched_fragments": 301,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002699145.1",
                "gtdb_species": "s__Halioglobus sp002699145",
                "ani": 76.8823,
                "matched_fragments": 226,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002868715.1",
                "gtdb_species": "s__Kineobactrum sediminis",
                "ani": 76.6309,
                "matched_fragments": 133,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Kineobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900106015.1",
                "gtdb_species": "s__Pseudomonas_E sihuiensis",
                "ani": 76.6175,
                "matched_fragments": 68,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 96.7402,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013385425.1",
                "gtdb_species": "s__Pseudomonas_E gingeri_D",
                "ani": 76.0644,
                "matched_fragments": 57,
                "total_fragments": 1435,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 4559965.5,
        "gc_content": 57.533,
        "coding_genes": 3929.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 42.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halioglobus",
        "maricola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}