{
    "type": "genome",
    "identifier": "GCF_009601015.1",
    "organism": "Lactococcus hircilactis",
    "title": "Lactococcus hircilactis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese center for disease control and prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009601015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13118404",
        "wgs_master": "WITJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1494462",
        "species_taxid": "1494462",
        "organism_name": "Lactococcus hircilactis",
        "infraspecific_name": "strain=DSM 28960",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/05",
        "asm_name": "ASM960101v1",
        "asm_submitter": "Chinese center for disease control and prevention",
        "gbrs_paired_asm": "GCA_009601015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/601/015/GCF_009601015.1_ASM960101v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2563666",
        "genome_size_ungapped": "2563656",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "49",
        "contig_count": "49",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009601015.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "2591",
        "protein_coding_gene_count": "2465",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-05",
    "dateModified": "2019-11-05",
    "datePublished": "2019-11-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus hircilactis"
        ],
        "sample_taxid": [
            "1494462"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.720 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2563666",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "246042",
        "N50 (bp)": "148035",
        "Gap Ratio (%)": "0.000390",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "2485",
        "Average Protein Length": "298.6",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lactococcus hircilactis",
                "strain": "strain=DSM 28960",
                "accession": "GCA_009601015.1",
                "taxid": 1494462,
                "species_taxid": 1494462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 828,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_900099625.1",
                "taxid": 1358,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9191,
                "matched_fragments": 202,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_001456385.1",
                "taxid": 1360,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7878,
                "matched_fragments": 201,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus nasutitermitis",
                "strain": "strain=NBRC 111537",
                "accession": "GCA_018403765.1",
                "taxid": 1652957,
                "species_taxid": 1652957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7312,
                "matched_fragments": 194,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_004354485.1",
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                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.728,
                "matched_fragments": 206,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus fujiensis",
                "strain": "strain=JCM 16395",
                "accession": "GCA_001311235.1",
                "taxid": 610251,
                "species_taxid": 610251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9695,
                "matched_fragments": 210,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus fujiensis",
                "strain": "strain=JCM 16395",
                "accession": "GCA_002441655.1",
                "taxid": 610251,
                "species_taxid": 610251,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7891,
                "matched_fragments": 215,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=DSM 20450",
                "accession": "GCA_002441785.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7658,
                "matched_fragments": 163,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus taiwanensis",
                "strain": "strain=NBRC 109049",
                "accession": "GCA_014905395.1",
                "taxid": 1151742,
                "species_taxid": 1151742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0514,
                "matched_fragments": 134,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus allomyrinae",
                "strain": "strain=1JSPR-7",
                "accession": "GCA_003627095.1",
                "taxid": 2419773,
                "species_taxid": 2419773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5841,
                "matched_fragments": 166,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009601015.1",
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                "ani": 100.0,
                "matched_fragments": 828,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900099625.1",
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                "ani": 79.866,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 223,
                "status": "-"
            },
            {
                "accession": "GCF_001591705.1",
                "gtdb_species": "s__Lactococcus cremoris",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
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                "num_clustered_genomes": 70,
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            },
            {
                "accession": "GCF_018403765.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009601055.1",
                "gtdb_species": "s__Lactococcus sp009601055",
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                "matched_fragments": 251,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
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            },
            {
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            },
            {
                "accession": "GCF_016027715.1",
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            },
            {
                "accession": "GCF_014905395.1",
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                "num_clustered_genomes": 6,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": -0.302,
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        "growth_tmp": 31.261,
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        "bacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "hircilactis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}