{ "type": "genome", "identifier": "GCF_009601165.1", "organism": "Alcanivorax sediminis", "title": "Alcanivorax sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009601165.1", "bioproject": "PRJNA224116", "biosample": "SAMN13151175", "wgs_master": "WIRE00000000.1", "refseq_category": "reference genome", "taxid": "2663008", "species_taxid": "2663008", "organism_name": "Alcanivorax sediminis", "infraspecific_name": "strain=PA15-N-34", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/05", "asm_name": "ASM960116v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources of PR China", "gbrs_paired_asm": "GCA_009601165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/601/165/GCF_009601165.1_ASM960116v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3798348", "genome_size_ungapped": "3798348", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009601165.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3454", "protein_coding_gene_count": "3401", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-05", "dateModified": "2019-11-05", "datePublished": "2019-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax sediminis" ], "sample_taxid": [ "2663008" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.075 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3798348", "Number of Sequences": "6", "Longest Sequences (bp)": "3189188", "N50 (bp)": "3189188", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "3473", "Average Protein Length": "322.2", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax sediminis", "strain": "strain=PA15-N-34", "accession": "GCA_009601165.1", "taxid": 2663008, "species_taxid": 2663008, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1264, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 83.8179, "matched_fragments": 894, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 81.853, "matched_fragments": 679, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 80.7939, "matched_fragments": 664, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 80.4815, "matched_fragments": 593, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax borkumensis", "strain": "strain=SK2", "accession": "GCA_000009365.1", "taxid": 59754, "species_taxid": 59754, "relation_to_type": "type", "validated": true, "ani": 79.2572, "matched_fragments": 430, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 78.6645, "matched_fragments": 355, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 78.5987, "matched_fragments": 337, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 78.2305, "matched_fragments": 322, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 77.8482, "matched_fragments": 220, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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