{ "type": "genome", "identifier": "GCF_009601765.2", "organism": "Vibrio algicola", "title": "Vibrio algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shangdong University Qingdao CAMPUS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009601765.2", "bioproject": "PRJNA224116", "biosample": "SAMN13112826", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2662262", "species_taxid": "2662262", "organism_name": "Vibrio algicola", "infraspecific_name": "strain=SM1977", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/06", "asm_name": "ASM960176v2", "asm_submitter": "Shangdong University Qingdao CAMPUS", "gbrs_paired_asm": "GCA_009601765.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/601/765/GCF_009601765.2_ASM960176v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3512181", "genome_size_ungapped": "3512181", "gc_percent": "42.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009601765.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3316", "protein_coding_gene_count": "3091", "non_coding_gene_count": "124", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-06", "dateModified": "2020-07-06", "datePublished": "2020-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio algicola" ], "sample_taxid": [ "2662262" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.991 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3512181", "Number of Sequences": "3", "Longest Sequences (bp)": "2518765", "N50 (bp)": "2518765", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.3", "Number of CDSs": "3235", "Average Protein Length": "306.4", "Coding Ratio (%)": "84.7", "Number of rRNAs": "28", "Number of tRNAs": "90", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio algicola", "strain": "strain=SM1977", "accession": "GCA_009601765.2", "taxid": 2662262, "species_taxid": 2662262, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1164, "total_fragments": 1169, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio hibernica", "strain": "strain=B1.19", "accession": "GCA_015223435.1", "taxid": 2587465, "species_taxid": 2587465, "relation_to_type": "type", "validated": true, "ani": 80.9656, "matched_fragments": 567, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio casei", "strain": "strain=DSM 22364", "accession": "GCA_002218025.2", "taxid": 673372, "species_taxid": 673372, "relation_to_type": "type", "validated": true, "ani": 80.1038, "matched_fragments": 415, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rumoiensis", "strain": "strain=FERM P-14531", "accession": "GCA_002218045.2", "taxid": 76258, "species_taxid": 76258, "relation_to_type": "type", "validated": true, "ani": 80.0299, "matched_fragments": 467, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio splendidus", "strain": "strain=LMG 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79.1671, "matched_fragments": 431, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 78.5925, "matched_fragments": 174, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ezurae", "strain": "strain=HDS1-1", "accession": "GCA_003568985.1", "taxid": 252583, "species_taxid": 252583, "relation_to_type": "type", "validated": true, "ani": 78.4068, "matched_fragments": 180, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009601765.2", "gtdb_species": "s__Vibrio sp009601765", "ani": 100.0, "matched_fragments": 1163, "total_fragments": 1169, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.65", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000426765.1", "gtdb_species": "s__Vibrio litoralis", "ani": 79.6184, "matched_fragments": 472, "total_fragments": 1169, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.36", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002934045.1", "gtdb_species": "s__Vibrio gangliei", "ani": 79.1728, "matched_fragments": 430, "total_fragments": 1169, "gtdb_taxonomy": 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