{ "type": "genome", "identifier": "GCF_009602535.1", "organism": "Ornithinicoccus halotolerans", "title": "Ornithinicoccus halotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009602535.1", "bioproject": "PRJNA224116", "biosample": "SAMN13135515", "wgs_master": "WIQI00000000.1", "refseq_category": "reference genome", "taxid": "1748220", "species_taxid": "1748220", "organism_name": "Ornithinicoccus halotolerans", "infraspecific_name": "strain=EGI 80423", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/06", "asm_name": "ASM960253v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_009602535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/535/GCF_009602535.1_ASM960253v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3324162", "genome_size_ungapped": "3324162", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "226", "contig_count": "226", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009602535.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3299", "protein_coding_gene_count": "3155", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-06", "dateModified": "2019-11-06", "datePublished": "2019-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Ornithinicoccus halotolerans" ], "sample_taxid": [ "1748220" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3324162", "Number of Sequences": "226", "Longest Sequences (bp)": "116824", "N50 (bp)": "26450", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.1", "Number of CDSs": "2985", "Average Protein Length": "316.4", "Coding Ratio (%)": "85.2", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ornithinicoccus halotolerans", "strain": "strain=EGI 80423", "accession": "GCA_009602535.1", "taxid": 1748220, "species_taxid": 1748220, 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"ani": 80.2455, "matched_fragments": 477, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium kibberense", "strain": "strain=DSM 17687", "accession": "GCA_006519705.1", "taxid": 282060, "species_taxid": 282060, "relation_to_type": "type", "validated": true, "ani": 79.9384, "matched_fragments": 451, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium humiphilum", "strain": "strain=DSM 12362", "accession": "GCA_006716885.1", "taxid": 125288, "species_taxid": 125288, "relation_to_type": "type", "validated": true, "ani": 79.9143, "matched_fragments": 445, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium avium", "strain": "strain=AMA3305", "accession": "GCA_003351765.1", "taxid": 2283195, "species_taxid": 2283195, "relation_to_type": "type", "validated": true, "ani": 79.8715, "matched_fragments": 466, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium pekingense", "strain": "strain=DSM 21552", "accession": "GCA_000421185.1", "taxid": 384677, "species_taxid": 384677, "relation_to_type": "type", "validated": true, "ani": 79.7918, "matched_fragments": 509, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium cavernae", "strain": "strain=KCTC 49018", "accession": "GCA_003121625.1", "taxid": 2666047, "species_taxid": 2666047, "relation_to_type": "type", "validated": true, "ani": 79.7493, "matched_fragments": 469, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium pekingense", "strain": "strain=CGMCC 1.5362", "accession": "GCA_014644955.1", "taxid": 384677, "species_taxid": 384677, "relation_to_type": "type", "validated": true, "ani": 79.7332, "matched_fragments": 504, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus sediminis", "strain": "strain=GP-T3-3", "accession": "GCA_004153545.1", "taxid": 2306021, "species_taxid": 2306021, "relation_to_type": "type", "validated": true, "ani": 79.6928, "matched_fragments": 456, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus marinus", "strain": "strain=DSM 15273", "accession": "GCA_008386315.1", "taxid": 247333, "species_taxid": 247333, "relation_to_type": "type", "validated": true, "ani": 79.6899, "matched_fragments": 436, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus hydrothermalis", "strain": "strain=JLT9", "accession": "GCA_001685415.1", "taxid": 1758689, "species_taxid": 1758689, "relation_to_type": "type", "validated": true, "ani": 79.6829, "matched_fragments": 452, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus chungangensis", "strain": "strain=CCUG 59777", "accession": "GCA_006337125.1", "taxid": 767452, "species_taxid": 767452, "relation_to_type": "type", "validated": true, "ani": 79.6496, "matched_fragments": 444, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus marinus", "strain": "strain=DSM 15273", "accession": "GCA_000421245.1", "taxid": 247333, "species_taxid": 247333, "relation_to_type": "type", "validated": true, "ani": 79.6279, "matched_fragments": 429, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium tianjinense", "strain": "strain=CGMCC 1.12160", "accession": "GCA_014636495.1", "taxid": 1195761, "species_taxid": 1195761, "relation_to_type": "type", "validated": true, "ani": 79.547, "matched_fragments": 439, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus kebangsaanensis", "strain": "strain=P2D13-UKM", "accession": "GCA_008919445.1", "taxid": 2602069, "species_taxid": 2602069, "relation_to_type": "type", "validated": true, "ani": 79.4956, "matched_fragments": 437, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium ciconiae", "strain": "strain=H23M54", "accession": "GCA_007197575.1", "taxid": 2594265, "species_taxid": 2594265, "relation_to_type": "type", "validated": true, "ani": 79.2068, "matched_fragments": 407, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 79.2045, "matched_fragments": 293, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus piscis", "strain": "strain=DSM 22760", "accession": "GCA_022568835.1", "taxid": 673954, "species_taxid": 673954, "relation_to_type": "type", "validated": true, "ani": 78.5769, "matched_fragments": 278, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=CGMCC 4.7300", "accession": "GCA_014646175.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 78.4802, "matched_fragments": 325, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=IP6SC6", "accession": "GCA_011326735.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 78.456, "matched_fragments": 325, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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401, "total_fragments": 1000, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Ornithinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004526345.1", "gtdb_species": "s__Serinicoccus flavus", "ani": 79.5147, "matched_fragments": 435, "total_fragments": 1000, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Serinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008919445.1", "gtdb_species": "s__Serinicoccus sp008919445", "ani": 79.4899, "matched_fragments": 438, "total_fragments": 1000, 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