{ "type": "genome", "identifier": "GCF_009602705.1", "organism": "Chryseobacterium vaccae", "title": "Chryseobacterium vaccae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009602705.1", "bioproject": "PRJNA224116", "biosample": "SAMN12598745", "wgs_master": "VSWH00000000.1", "refseq_category": "reference genome", "taxid": "2604424", "species_taxid": "2604424", "organism_name": "Chryseobacterium vaccae", "infraspecific_name": "strain=CA7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/06", "asm_name": "ASM960270v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_009602705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/602/705/GCF_009602705.1_ASM960270v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5125723", "genome_size_ungapped": "5125723", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009602705.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4729", "protein_coding_gene_count": "4612", "non_coding_gene_count": "102", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-06", "dateModified": "2019-11-06", "datePublished": "2019-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium vaccae" ], "sample_taxid": [ "2604424" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.430 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5125723", "Number of Sequences": "2", "Longest Sequences (bp)": "5103005", "N50 (bp)": "5103005", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.4", "Number of CDSs": "4570", "Average Protein Length": "322.5", "Coding Ratio (%)": "86.3", "Number of rRNAs": "18", "Number of tRNAs": "79", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium vaccae", "strain": "strain=CA7", "accession": "GCA_009602705.1", "taxid": 2604424, "species_taxid": 2604424, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1705, "total_fragments": 1708, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium endalhagicum", "strain": "strain=L7", "accession": "GCA_016745235.1", "taxid": 2797638, "species_taxid": 2797638, "relation_to_type": "type", "validated": true, "ani": 81.9709, "matched_fragments": 971, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium angstadtii", "strain": "strain=KM", "accession": "GCA_001045465.1", "taxid": 558151, "species_taxid": 558151, "relation_to_type": "type", "validated": true, "ani": 81.9538, "matched_fragments": 959, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium elymi", "strain": "strain=KCTC 22547", "accession": "GCA_003385495.1", "taxid": 395936, "species_taxid": 395936, "relation_to_type": "type", "validated": true, "ani": 81.7466, "matched_fragments": 902, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 81.7394, "matched_fragments": 990, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=NBRC 105250", "accession": "GCA_007991435.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 81.7025, "matched_fragments": 904, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium carnipullorum", "strain": "strain=DSM 25581", "accession": "GCA_900142785.1", "taxid": 1124835, "species_taxid": 1124835, "relation_to_type": "type", "validated": true, "ani": 81.6784, "matched_fragments": 929, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=KCTC 22544", "accession": "GCA_003290185.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 81.6665, "matched_fragments": 920, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 81.6649, "matched_fragments": 949, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium vrystaatense", "strain": "strain=LMG 22846", "accession": "GCA_000737765.1", "taxid": 307480, "species_taxid": 307480, "relation_to_type": "type", "validated": true, "ani": 81.6508, "matched_fragments": 974, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium kwangjuense", "strain": "strain=KJ1R5", "accession": "GCA_001563495.1", "taxid": 267125, "species_taxid": 267125, "relation_to_type": "type", "validated": true, "ani": 81.614, "matched_fragments": 978, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_900156575.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 81.5805, "matched_fragments": 934, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 81.5733, "matched_fragments": 959, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=C-26", "accession": "GCA_001684955.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 81.5431, "matched_fragments": 840, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 81.4423, "matched_fragments": 905, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aureum", "strain": "strain=17S1E7", "accession": "GCA_003971235.1", "taxid": 2497456, "species_taxid": 2497456, "relation_to_type": "type", "validated": true, "ani": 81.3934, "matched_fragments": 918, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium viscerum", "strain": "strain=687B-08", "accession": "GCA_002899945.2", "taxid": 1037377, "species_taxid": 1037377, "relation_to_type": "type", "validated": true, "ani": 81.3453, "matched_fragments": 959, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NCTC10796", "accession": "GCA_900460995.1", "taxid": 253, "species_taxid": 253, "relation_to_type": "type", "validated": true, "ani": 81.2812, "matched_fragments": 863, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NBRC 14944", "accession": "GCA_000520835.1", "taxid": 253, "species_taxid": 253, "relation_to_type": "type", "validated": true, "ani": 81.2312, "matched_fragments": 845, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium culicis", "strain": "strain=DSM 23031", "accession": "GCA_900108365.1", "taxid": 680127, "species_taxid": 680127, "relation_to_type": "type", "validated": true, "ani": 81.1842, "matched_fragments": 886, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=DSM 16777", "accession": "GCA_900113975.1", "taxid": 253, "species_taxid": 253, "relation_to_type": "type", "validated": true, "ani": 81.1796, "matched_fragments": 845, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.5133, "matched_fragments": 694, "total_fragments": 1708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.4915, "matched_fragments": 685, 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