{ "type": "genome", "identifier": "GCF_009618275.1", "organism": "Roseimaritima sediminicola", "title": "Roseimaritima sediminicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JNTUH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009618275.1", "bioproject": "PRJNA224116", "biosample": "SAMN13107615", "wgs_master": "WIAD00000000.1", "refseq_category": "reference genome", "taxid": "2662066", "species_taxid": "2662066", "organism_name": "Roseimaritima sediminicola", "infraspecific_name": "strain=JC651", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/07", "asm_name": "ASM961827v1", "asm_submitter": "JNTUH", "gbrs_paired_asm": "GCA_009618275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/618/275/GCF_009618275.1_ASM961827v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6245843", "genome_size_ungapped": "6245843", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "185", "contig_count": "185", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009618275.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4599", "protein_coding_gene_count": "4504", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-07", "dateModified": "2019-11-07", "datePublished": "2019-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseimaritima sediminicola" ], "sample_taxid": [ "2662066" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Chilika Lagoon" ], "sample_host_location_id": [], "data_size": "1.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6245843", "Number of Sequences": "185", "Longest Sequences (bp)": "484178", "N50 (bp)": "92046", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "4545", "Average Protein Length": "387.7", "Coding Ratio (%)": "84.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseimaritima sediminicola", "strain": "strain=JC651", "accession": "GCA_009618275.1", "taxid": 2662066, "species_taxid": 2662066, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2000, "total_fragments": 2008, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=DSM 25454", "accession": "GCA_001642915.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 78.6324, "matched_fragments": 805, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=UC8", "accession": "GCA_008065135.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 78.6245, "matched_fragments": 796, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima multifibrata", "strain": "strain=FF011L", "accession": "GCA_007741495.1", "taxid": 1930274, "species_taxid": 1930274, "relation_to_type": "type", "validated": true, "ani": 76.6829, "matched_fragments": 231, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria maiorica", "strain": "strain=Mal15", "accession": "GCA_008035925.1", "taxid": 2795974, "species_taxid": 2795974, "relation_to_type": "type", "validated": true, "ani": 76.4993, "matched_fragments": 299, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiconus nitratireducens", "strain": "strain=JC645", "accession": "GCA_008629675.1", "taxid": 2605748, "species_taxid": 2605748, "relation_to_type": "type", "validated": true, "ani": 76.4101, "matched_fragments": 233, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma conspicua", "strain": "strain=Mal65", "accession": "GCA_007752935.1", "taxid": 2527996, "species_taxid": 2527996, "relation_to_type": "type", "validated": true, "ani": 76.394, "matched_fragments": 210, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria neptunia", "strain": "strain=Enr13", "accession": "GCA_007754155.1", "taxid": 2527979, "species_taxid": 2527979, "relation_to_type": "type", "validated": true, "ani": 76.3834, "matched_fragments": 264, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rosistilla carotiformis", "strain": "strain=Poly24", "accession": "GCA_007753095.1", "taxid": 2528017, "species_taxid": 2528017, "relation_to_type": "type", "validated": true, "ani": 76.1824, "matched_fragments": 162, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea cavernae", "strain": "strain=CGMCC 4.7367", "accession": "GCA_014653695.1", "taxid": 2020703, "species_taxid": 2020703, "relation_to_type": "type", "validated": true, "ani": 74.6932, "matched_fragments": 79, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allostreptomyces psammosilenae", "strain": "strain=DSM 42178", "accession": "GCA_013407765.1", "taxid": 1892865, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Roseimaritima", "sediminicola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }