{ "type": "genome", "identifier": "GCF_009646095.1", "organism": "Raineyella fluvialis", "title": "Raineyella fluvialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "World Institute of Kimchi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009646095.1", "bioproject": "PRJNA224116", "biosample": "SAMN13111903", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2662261", "species_taxid": "2662261", "organism_name": "Raineyella fluvialis", "infraspecific_name": "strain=CBA3103", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/09", "asm_name": "ASM964609v1", "asm_submitter": "World Institute of Kimchi", "gbrs_paired_asm": "GCA_009646095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/646/095/GCF_009646095.1_ASM964609v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3649865", "genome_size_ungapped": "3649865", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009646095.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "3504", "protein_coding_gene_count": "3224", "non_coding_gene_count": "64", "pubmed_id": "32589569" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-09", "dateModified": "2019-11-09", "datePublished": "2019-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Raineyella fluvialis" ], "sample_taxid": [ "2662261" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.984 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3649865", "Number of Sequences": "1", "Longest Sequences (bp)": "3649865", "N50 (bp)": "3649865", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "3552", "Average Protein Length": "308.8", "Coding Ratio (%)": "90.2", "Number of rRNAs": "9", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Raineyella fluvialis", "strain": "strain=CBA3103", "accession": "GCA_009646095.1", "taxid": 2662261, "species_taxid": 2662261, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1216, "total_fragments": 1216, "ani_threshold": 95, 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