{
    "type": "genome",
    "identifier": "GCF_009646115.1",
    "organism": "Pantoea eucalypti",
    "title": "Pantoea eucalypti",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Forestry University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009646115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10385900",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "470933",
        "species_taxid": "470933",
        "organism_name": "Pantoea eucalypti",
        "infraspecific_name": "strain=LMG 24197",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/09",
        "asm_name": "ASM964611v1",
        "asm_submitter": "Nanjing Forestry University",
        "gbrs_paired_asm": "GCA_009646115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/646/115/GCF_009646115.1_ASM964611v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4798990",
        "genome_size_ungapped": "4798990",
        "gc_percent": "54.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009646115.1-RS_2024_03_22",
        "annotation_date": "2024-03-22",
        "total_gene_count": "4504",
        "protein_coding_gene_count": "4309",
        "non_coding_gene_count": "117",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-09",
    "dateModified": "2019-11-09",
    "datePublished": "2019-11-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pantoea eucalypti"
        ],
        "sample_taxid": [
            "470933"
        ],
        "sample_host_organism": [
            "eucalypti of Eucalyptus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Uruguay"
        ],
        "sample_host_location_id": [],
        "data_size": "1.354 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4798990",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "4035995",
        "N50 (bp)": "4035995",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "4416",
        "Average Protein Length": "310.2",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "21",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pantoea eucalypti",
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                "accession": "GCA_009646115.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1596,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pantoea eucalypti",
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                "accession": "GCA_006494355.1",
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                "relation_to_type": "type",
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                "status": "conclusive"
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            {
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                "species_taxid": 549,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea agglomerans",
                "strain": "strain=NBRC 102470",
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                "taxid": 549,
                "species_taxid": 549,
                "relation_to_type": "suspected-type",
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                "ani": 90.5976,
                "matched_fragments": 1341,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea deleyi",
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                "accession": "GCA_002095375.1",
                "taxid": 470932,
                "species_taxid": 470932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.585,
                "matched_fragments": 1118,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea deleyi",
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                "accession": "GCA_022647325.1",
                "taxid": 470932,
                "species_taxid": 470932,
                "relation_to_type": "type",
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                "matched_fragments": 1260,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea conspicua",
                "strain": "strain=LMG 24534",
                "accession": "GCA_002095315.1",
                "taxid": 472705,
                "species_taxid": 472705,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6408,
                "matched_fragments": 1121,
                "total_fragments": 1598,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea stewartii subsp. indologenes",
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                "accession": "GCA_000757405.2",
                "taxid": 66270,
                "species_taxid": 66269,
                "relation_to_type": "type",
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                "matched_fragments": 821,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=X001",
                "accession": "GCA_024169515.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8534,
                "matched_fragments": 696,
                "total_fragments": 1598,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia phyllosphaerae",
                "strain": "strain=CMYE1",
                "accession": "GCA_019132875.1",
                "taxid": 2853256,
                "species_taxid": 2853256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0724,
                "matched_fragments": 611,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 477,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_009646115.1",
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                "matched_fragments": 1596,
                "total_fragments": 1598,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
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                "mean_intra_species_ani": "99.21",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}