{ "type": "genome", "identifier": "GCF_009649735.1", "organism": "Salinibacillus xinjiangensis", "title": "Salinibacillus xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009649735.1", "bioproject": "PRJNA224116", "biosample": "SAMN13190880", "wgs_master": "WJNH00000000.1", "refseq_category": "reference genome", "taxid": "1229268", "species_taxid": "1229268", "organism_name": "Salinibacillus xinjiangensis", "infraspecific_name": "strain=J4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/11", "asm_name": "ASM964973v1", "asm_submitter": "Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_009649735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/649/735/GCF_009649735.1_ASM964973v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3730785", "genome_size_ungapped": "3730785", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009649735.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3927", "protein_coding_gene_count": "3753", "non_coding_gene_count": "122", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-11", "dateModified": "2019-11-11", "datePublished": "2019-11-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinibacillus xinjiangensis" ], "sample_taxid": [ "1229268" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.061 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3730785", "Number of Sequences": "39", "Longest Sequences (bp)": "592655", "N50 (bp)": "286301", "Gap Ratio (%)": "0.000348", "GCcontent (%)": "38.5", "Number of CDSs": "3858", "Average Protein Length": "276.1", "Coding Ratio (%)": "85.7", "Number of rRNAs": "11", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinibacillus xinjiangensis", "strain": "strain=J4", "accession": "GCA_009649735.1", "taxid": 1229268, "species_taxid": 1229268, 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"below_threshold" }, { "organism_name": "Virgibacillus litoralis", "strain": "strain=DSM 21085", "accession": "GCA_017873675.1", "taxid": 578221, "species_taxid": 578221, "relation_to_type": "type", "validated": true, "ani": 76.6723, "matched_fragments": 59, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus subterraneus", "strain": "strain=CGMCC 1.7734", "accession": "GCA_900110695.1", "taxid": 621109, "species_taxid": 621109, "relation_to_type": "type", "validated": true, "ani": 76.6576, "matched_fragments": 56, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacillus litoralis", "strain": "strain=JSM 072002", "accession": "GCA_000775615.1", "taxid": 516703, "species_taxid": 516703, "relation_to_type": "type", "validated": true, "ani": 76.1272, "matched_fragments": 75, "total_fragments": 1231, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Salinibacillus", "xinjiangensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }