{ "type": "genome", "identifier": "GCF_009650095.1", "organism": "Gracilibacillus salitolerans", "title": "Gracilibacillus salitolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009650095.1", "bioproject": "PRJNA224116", "biosample": "SAMN13151296", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2663022", "species_taxid": "2663022", "organism_name": "Gracilibacillus salitolerans", "infraspecific_name": "strain=SCU50", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/12", "asm_name": "ASM965009v1", "asm_submitter": "Sichuan University", "gbrs_paired_asm": "GCA_009650095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/650/095/GCF_009650095.1_ASM965009v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5088110", "genome_size_ungapped": "5088110", "gc_percent": "36.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009650095.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4783", "protein_coding_gene_count": "4609", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-12", "dateModified": "2019-11-12", "datePublished": "2019-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Gracilibacillus salitolerans" ], "sample_taxid": [ "2663022" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Gansu Province" ], "sample_host_location_id": [], "data_size": "1.434 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5088110", "Number of Sequences": "1", "Longest Sequences (bp)": "5088110", "N50 (bp)": "5088110", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "4770", "Average Protein Length": "302.1", "Coding Ratio (%)": "85.0", "Number of rRNAs": "21", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gracilibacillus salitolerans", "strain": "strain=SCU50", "accession": "GCA_009650095.1", "taxid": 2663022, "species_taxid": 2663022, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1696, "total_fragments": 1696, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gracilibacillus orientalis", "strain": "strain=CGMCC 1.4250", "accession": "GCA_900114645.1", "taxid": 334253, "species_taxid": 334253, "relation_to_type": "type", "validated": true, "ani": 87.1284, "matched_fragments": 1205, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus suaedae", "strain": "strain=LD4P30", "accession": "GCA_017599345.1", "taxid": 2820273, "species_taxid": 2820273, "relation_to_type": "type", "validated": true, "ani": 85.7047, "matched_fragments": 1123, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus lacisalsi", "strain": "strain=DSM 19029", "accession": "GCA_000377765.1", "taxid": 393087, "species_taxid": 393087, "relation_to_type": "type", "validated": true, "ani": 85.5248, "matched_fragments": 1108, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus thailandensis", "strain": "strain=TP2-8", "accession": "GCA_009659515.1", "taxid": 563735, "species_taxid": 563735, "relation_to_type": "type", "validated": true, "ani": 85.4847, "matched_fragments": 1021, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus thailandensis", "strain": "strain=TP2-8", "accession": "GCA_010994055.1", "taxid": 563735, "species_taxid": 563735, "relation_to_type": "type", "validated": true, "ani": 85.4227, "matched_fragments": 1016, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus saliphilus", "strain": "strain=YIM 91119", "accession": "GCA_010994085.1", "taxid": 543890, "species_taxid": 543890, "relation_to_type": "type", "validated": true, "ani": 85.4199, "matched_fragments": 1083, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 78.3387, "matched_fragments": 73, "total_fragments": 1696, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009650095.1", "gtdb_species": "s__Gracilibacillus sp002797295", "ani": 100.0, "matched_fragments": 1696, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900114645.1", "gtdb_species": "s__Gracilibacillus orientalis", "ani": 87.1074, "matched_fragments": 1207, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017599345.1", "gtdb_species": "s__Gracilibacillus sp017599345", "ani": 85.7098, "matched_fragments": 1122, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000377765.1", "gtdb_species": "s__Gracilibacillus lacisalsi", "ani": 85.5362, "matched_fragments": 1106, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.88", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900143085.1", "gtdb_species": "s__Gracilibacillus kekensis", "ani": 79.2369, "matched_fragments": 519, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001458115.1", "gtdb_species": "s__Gracilibacillus massiliensis", "ani": 79.1445, "matched_fragments": 543, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000521485.1", "gtdb_species": "s__Gracilibacillus boraciitolerans", "ani": 78.6816, "matched_fragments": 418, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Gracilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003612345.1", "gtdb_species": "s__Virgibacillus sp003612345", "ani": 76.6015, "matched_fragments": 64, "total_fragments": 1696, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.45, "cell_length": 0.306, "doubling_h": null, "growth_tmp": 32.0, "optimum_tmp": 35.375, "optimum_ph": 7.531, "genome_size": 4155643.833, "gc_content": 36.8, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gracilibacillus", "salitolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }