{ "type": "genome", "identifier": "GCF_009650435.1", "organism": "Foetidibacter luteolus", "title": "Foetidibacter luteolus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang sci-tech university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009650435.1", "bioproject": "PRJNA224116", "biosample": "SAMN12697411", "wgs_master": "VVIP00000000.1", "refseq_category": "reference genome", "taxid": "2608880", "species_taxid": "2608880", "organism_name": "Foetidibacter luteolus", "infraspecific_name": "strain=YG09", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/12", "asm_name": "ASM965043v1", "asm_submitter": "Zhejiang sci-tech university", "gbrs_paired_asm": "GCA_009650435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/650/435/GCF_009650435.1_ASM965043v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7288627", "genome_size_ungapped": "7287527", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "95", "contig_count": "95", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009650435.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "5792", "protein_coding_gene_count": "5701", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-12", "dateModified": "2019-11-12", "datePublished": "2019-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Foetidibacter luteolus" ], "sample_taxid": [ "2608880" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hangzhou" ], "sample_host_location_id": [], "data_size": "2.056 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7288627", "Number of Sequences": "95", "Longest Sequences (bp)": "419660", "N50 (bp)": "144945", "Gap Ratio (%)": "0.015092", "GCcontent (%)": "44.6", "Number of CDSs": "5598", "Average Protein Length": "348.8", "Coding Ratio (%)": "80.4", "Number of rRNAs": "9", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Foetidibacter luteolus", "strain": "strain=YG09", "accession": "GCA_009650435.1", "taxid": 2608880, "species_taxid": 2608880, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2373, "total_fragments": 2381, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Panacibacter microcysteis", "strain": "strain=DH6", "accession": "GCA_015831355.1", "taxid": 2793269, "species_taxid": 2793269, "relation_to_type": "type", "validated": true, "ani": 76.7646, "matched_fragments": 217, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 76.711, "matched_fragments": 52, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deminuibacter soli", "strain": "strain=K23C18032701", "accession": "GCA_003412455.1", "taxid": 2291815, "species_taxid": 2291815, "relation_to_type": "type", "validated": true, "ani": 76.4646, "matched_fragments": 191, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas lacunae", "strain": "strain=NBRC 104114", "accession": "GCA_002355595.1", "taxid": 477680, "species_taxid": 477680, "relation_to_type": "type", "validated": true, "ani": 76.4259, "matched_fragments": 151, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea sandarakina", "strain": "strain=DSM 23241", "accession": "GCA_003254115.1", "taxid": 1004304, "species_taxid": 1004304, "relation_to_type": "type", "validated": true, "ani": 76.3583, "matched_fragments": 63, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium roseum", "strain": "strain=SYL130", "accession": "GCA_009939005.1", "taxid": 1978412, "species_taxid": 1978412, "relation_to_type": "type", "validated": true, "ani": 76.3033, "matched_fragments": 76, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilyomonas limi", "strain": "strain=17mud1-8", "accession": "GCA_005233845.1", "taxid": 2575867, "species_taxid": 2575867, "relation_to_type": "type", "validated": true, "ani": 76.2081, "matched_fragments": 149, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parafilimonas terrae", "strain": "strain=DSM 28286", "accession": "GCA_900115755.1", "taxid": 1465490, "species_taxid": 1465490, "relation_to_type": "type", "validated": true, "ani": 76.2049, "matched_fragments": 164, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter ginsenosidivorans", "strain": "strain=Gsoil1550", "accession": "GCA_007971225.1", "taxid": 1813871, "species_taxid": 1813871, "relation_to_type": "type", "validated": true, "ani": 76.1939, "matched_fragments": 167, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas zeae", "strain": "strain=CGMCC 1.15290", "accession": "GCA_014641615.1", "taxid": 1737353, "species_taxid": 1737353, "relation_to_type": "type", "validated": true, "ani": 76.1673, "matched_fragments": 168, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas lacunae", "strain": "strain=DSM 21054", "accession": "GCA_900156765.1", "taxid": 477680, "species_taxid": 477680, "relation_to_type": "type", "validated": true, "ani": 76.1603, "matched_fragments": 147, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Segetibacter koreensis", "strain": "strain=DSM 18137", "accession": "GCA_000374045.1", "taxid": 398037, "species_taxid": 398037, "relation_to_type": "type", "validated": true, "ani": 76.1177, "matched_fragments": 68, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnovirga soli", "strain": "strain=KCS-6", "accession": "GCA_013106755.1", "taxid": 2656915, "species_taxid": 2656915, "relation_to_type": "type", "validated": true, "ani": 76.0889, "matched_fragments": 164, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 76.0171, "matched_fragments": 60, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea flava", "strain": "strain=CCUG 51397", "accession": "GCA_001623405.1", "taxid": 714549, "species_taxid": 714549, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9154, "matched_fragments": 75, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrotalea lipotrueae", "strain": "strain=TMF_100", "accession": "GCA_019249625.1", "taxid": 2803817, "species_taxid": 2803817, "relation_to_type": "type", "validated": true, "ani": 75.7803, "matched_fragments": 80, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 75.7342, "matched_fragments": 106, "total_fragments": 2381, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009650435.1", "gtdb_species": "s__Foetidibacter luteolus", "ani": 100.0, "matched_fragments": 2371, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Foetidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000515315.1", "gtdb_species": "s__Sediminibacterium sp000515315", "ani": 76.5489, "matched_fragments": 98, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "96.66", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003412455.1", "gtdb_species": "s__Deminuibacter soli", "ani": 76.4646, "matched_fragments": 191, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Deminuibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003254115.1", "gtdb_species": "s__Hydrotalea sandarakina", "ani": 76.3819, "matched_fragments": 62, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004361915.1", "gtdb_species": "s__Sediminibacterium goheungense", "ani": 76.3049, "matched_fragments": 85, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903882935.1", "gtdb_species": "s__JABDFW01 sp903882935", "ani": 76.2818, "matched_fragments": 160, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JABDFW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_013285915.1", "gtdb_species": "s__JABDFW01 sp013285915", "ani": 76.2178, "matched_fragments": 118, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JABDFW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007994055.1", "gtdb_species": "s__Filimonas endophytica", "ani": 76.2036, "matched_fragments": 154, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Filimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007971225.1", "gtdb_species": "s__Panacibacter ginsenosidivorans", "ani": 76.1988, "matched_fragments": 169, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014641615.1", "gtdb_species": "s__Filimonas zeae", "ani": 76.1569, "matched_fragments": 169, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Filimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002390845.1", "gtdb_species": "s__Panacibacter sp002390845", "ani": 76.1556, "matched_fragments": 195, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017306865.1", "gtdb_species": "s__JAFKHH01 sp017306865", "ani": 76.1112, "matched_fragments": 119, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JAFKHH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013106755.1", "gtdb_species": "s__Panacibacter sp013106755", "ani": 76.1056, "matched_fragments": 162, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Panacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097095.1", "gtdb_species": "s__Filimonas sp003097095", "ani": 76.0638, "matched_fragments": 162, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Filimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002973575.1", "gtdb_species": "s__Sediminibacterium magnilacihabitans", "ani": 75.9934, "matched_fragments": 106, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016192105.1", "gtdb_species": "s__JJ008 sp016192105", "ani": 75.9923, "matched_fragments": 60, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004028765.1", "gtdb_species": "s__Sediminibacterium sp004028765", "ani": 75.9389, "matched_fragments": 92, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001623405.1", "gtdb_species": "s__Hydrotalea flava", "ani": 75.9154, "matched_fragments": 75, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.88", "min_intra_species_ani": "95.18", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_903884185.1", "gtdb_species": "s__CAILAF01 sp903884185", "ani": 75.882, "matched_fragments": 58, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__CAILAF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013289015.1", "gtdb_species": "s__Parafilimonas sp013289015", "ani": 75.5205, "matched_fragments": 61, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903642275.1", "gtdb_species": "s__Parafilimonas sp903642275", "ani": 75.2878, "matched_fragments": 76, "total_fragments": 2381, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Parafilimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Foetidibacter", "luteolus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }