{
    "type": "genome",
    "identifier": "GCF_009664085.1",
    "organism": "Thermochromatium tepidum ATCC 43061",
    "title": "Thermochromatium tepidum ATCC 43061",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northern Illinois University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009664085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11388997",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "316276",
        "species_taxid": "1050",
        "organism_name": "Thermochromatium tepidum ATCC 43061",
        "infraspecific_name": "strain=ATCC 43061",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/15",
        "asm_name": "ASM966408v1",
        "asm_submitter": "Northern Illinois University",
        "gbrs_paired_asm": "GCA_009664085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/664/085/GCF_009664085.1_ASM966408v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2958290",
        "genome_size_ungapped": "2958290",
        "gc_percent": "63.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009664085.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "2729",
        "protein_coding_gene_count": "2627",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-15",
    "dateModified": "2019-11-15",
    "datePublished": "2019-11-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermochromatium tepidum ATCC 43061"
        ],
        "sample_taxid": [
            "316276"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Yellowstone National Park"
        ],
        "sample_host_location_id": [],
        "data_size": "0.821 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2958290",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2958290",
        "N50 (bp)": "2958290",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.4",
        "Number of CDSs": "2674",
        "Average Protein Length": "331.5",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Allochromatium tepidum",
                "strain": "strain=NZ",
                "accession": "GCA_018409545.1",
                "taxid": 553982,
                "species_taxid": 553982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3334,
                "matched_fragments": 803,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium humboldtianum",
                "strain": "strain=DSM 21881",
                "accession": "GCA_013385175.1",
                "taxid": 504901,
                "species_taxid": 504901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0066,
                "matched_fragments": 798,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium vinosum",
                "strain": "strain=DSM 180",
                "accession": "GCA_000025485.1",
                "taxid": 1049,
                "species_taxid": 1049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4891,
                "matched_fragments": 748,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocystis violacea",
                "strain": "strain=DSM 207",
                "accession": "GCA_016583575.1",
                "taxid": 13725,
                "species_taxid": 13725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1817,
                "matched_fragments": 518,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_004343155.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8757,
                "matched_fragments": 454,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium purpuratum",
                "strain": "strain=984",
                "accession": "GCA_000224005.3",
                "taxid": 37487,
                "species_taxid": 37487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8702,
                "matched_fragments": 433,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiorhodococcus minor",
                "strain": "strain=DSM 11518",
                "accession": "GCA_010820565.1",
                "taxid": 57489,
                "species_taxid": 57489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.442,
                "matched_fragments": 410,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium warmingii",
                "strain": "strain=DSM 173",
                "accession": "GCA_900107145.1",
                "taxid": 61595,
                "species_taxid": 61595,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3222,
                "matched_fragments": 229,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caldichromatium japonicum",
                "strain": "strain=No.7",
                "accession": "GCA_011290485.1",
                "taxid": 2699430,
                "species_taxid": 2699430,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2208,
                "matched_fragments": 411,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa rosea",
                "strain": "strain=DSM 235",
                "accession": "GCA_003634315.1",
                "taxid": 69360,
                "species_taxid": 69360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1044,
                "matched_fragments": 323,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa roseopersicina",
                "strain": "strain=DSM 217",
                "accession": "GCA_900106925.1",
                "taxid": 1058,
                "species_taxid": 1058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0057,
                "matched_fragments": 316,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa bogorovii",
                "strain": "strain=BBS",
                "accession": "GCA_021228795.1",
                "taxid": 521689,
                "species_taxid": 521689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9263,
                "matched_fragments": 291,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioflavicoccus mobilis",
                "strain": "strain=8321",
                "accession": "GCA_000327045.1",
                "taxid": 80679,
                "species_taxid": 80679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8135,
                "matched_fragments": 236,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas granuli",
                "strain": "strain=Gr-4",
                "accession": "GCA_007795095.1",
                "taxid": 1176533,
                "species_taxid": 1176533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6519,
                "matched_fragments": 74,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6469,
                "matched_fragments": 85,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas hydrolytica",
                "strain": "strain=DSWY01",
                "accession": "GCA_021495345.2",
                "taxid": 2493633,
                "species_taxid": 2493633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5092,
                "matched_fragments": 87,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
                "strain": "strain=UL073",
                "accession": "GCA_016901015.1",
                "taxid": 2809017,
                "species_taxid": 2809017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6769,
                "matched_fragments": 79,
                "total_fragments": 986,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009664085.1",
                "gtdb_species": "s__Thermochromatium tepidum",
                "ani": 100.0,
                "matched_fragments": 985,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thermochromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018409545.1",
                "gtdb_species": "s__Allochromatium tepidum",
                "ani": 86.3298,
                "matched_fragments": 805,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013385175.1",
                "gtdb_species": "s__Allochromatium humboldtianum",
                "ani": 86.0212,
                "matched_fragments": 797,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000025485.1",
                "gtdb_species": "s__Allochromatium vinosum",
                "ani": 85.5071,
                "matched_fragments": 743,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.59",
                "min_intra_species_ani": "97.59",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009720725.1",
                "gtdb_species": "s__Allochromatium palmeri",
                "ani": 83.3632,
                "matched_fragments": 735,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016583575.1",
                "gtdb_species": "s__Thiocystis violacea",
                "ani": 79.186,
                "matched_fragments": 517,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107145.1",
                "gtdb_species": "s__Allochromatium warmingii",
                "ani": 78.3222,
                "matched_fragments": 229,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900106925.1",
                "gtdb_species": "s__Thiocapsa roseopersicina",
                "ani": 78.0047,
                "matched_fragments": 316,
                "total_fragments": 986,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Thermochromatium",
        "tepidum",
        "ATCC",
        "43061"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}