{ "type": "genome", "identifier": "GCF_009669325.1", "organism": "Roseovarius bejariae", "title": "Roseovarius bejariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Granada", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009669325.1", "bioproject": "PRJNA224116", "biosample": "SAMN11579733", "wgs_master": "SZWE00000000.1", "refseq_category": "reference genome", "taxid": "2576383", "species_taxid": "2576383", "organism_name": "Roseovarius bejariae", "infraspecific_name": "strain=A21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/18", "asm_name": "ASM966932v1", "asm_submitter": "University of Granada", "gbrs_paired_asm": "GCA_009669325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/669/325/GCF_009669325.1_ASM966932v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3498676", "genome_size_ungapped": "3498676", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009669325.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3413", "protein_coding_gene_count": "3350", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-18", "dateModified": "2019-11-18", "datePublished": "2019-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius bejariae" ], "sample_taxid": [ "2576383" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain:Murcia,Rambla Salada" ], "sample_host_location_id": [], "data_size": "0.977 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3498676", "Number of Sequences": "3", "Longest Sequences (bp)": "2888489", "N50 (bp)": "2888489", "Gap Ratio (%)": "0.000029", "GCcontent (%)": "61.3", "Number of CDSs": "3363", "Average Protein Length": "313.0", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius bejariae", "strain": "strain=A21", "accession": "GCA_009669325.1", "taxid": 2576383, "species_taxid": 2576383, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1164, "total_fragments": 1165, "ani_threshold": 95, 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"Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 79.9274, "matched_fragments": 578, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 79.7882, "matched_fragments": 596, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gahaiensis", "strain": "strain=GH877", "accession": "GCA_011601345.1", "taxid": 2716691, "species_taxid": 2716691, "relation_to_type": "type", "validated": true, "ani": 79.4838, "matched_fragments": 558, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 79.2485, "matched_fragments": 586, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 78.5497, "matched_fragments": 414, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 78.5309, "matched_fragments": 396, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, 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"total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter aestuariivivens", "strain": "strain=TSTF-M16", "accession": "GCA_014763045.1", "taxid": 2766981, "species_taxid": 2766981, "relation_to_type": "type", "validated": true, "ani": 77.0754, "matched_fragments": 244, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 76.4846, "matched_fragments": 113, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009669325.1", "gtdb_species": "s__Roseovarius bejariae", "ani": 100.0, "matched_fragments": 1164, "total_fragments": 1165, "gtdb_taxonomy": 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