{ "type": "genome", "identifier": "GCF_009674815.1", "organism": "Flavobacterium resistens", "title": "Flavobacterium resistens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lycoming College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009674815.1", "bioproject": "PRJNA224116", "biosample": "SAMN13262566", "wgs_master": "WKKG00000000.1", "refseq_category": "na", "taxid": "443612", "species_taxid": "443612", "organism_name": "Flavobacterium resistens", "infraspecific_name": "strain=DSM 19382", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/19", "asm_name": "ASM967481v1", "asm_submitter": "Lycoming College", "gbrs_paired_asm": "GCA_009674815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/674/815/GCF_009674815.1_ASM967481v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5019622", "genome_size_ungapped": "5019622", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009674815.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4297", "protein_coding_gene_count": "4220", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-19", "dateModified": "2019-11-19", "datePublished": "2019-11-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium resistens" ], "sample_taxid": [ "443612" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Busan" ], "sample_host_location_id": [], "data_size": "1.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5019622", "Number of Sequences": "31", "Longest Sequences (bp)": "980871", "N50 (bp)": "383237", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.3", "Number of CDSs": "4208", "Average Protein Length": "346.4", "Coding Ratio (%)": "87.1", "Number of rRNAs": "7", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_009674815.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1658, "total_fragments": 1658, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium resistens", "strain": "strain=DSM 19382", "accession": "GCA_900182645.1", "taxid": 443612, "species_taxid": 443612, "relation_to_type": "type", "validated": true, "ani": 99.9821, "matched_fragments": 1652, "total_fragments": 1658, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium zhairuonense", "strain": "strain=A5.7", "accession": "GCA_004352915.1", "taxid": 2493631, "species_taxid": 2493631, "relation_to_type": "type", "validated": true, "ani": 87.8131, "matched_fragments": 1376, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 87.2213, "matched_fragments": 1284, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daemonense", "strain": "strain=JCM 19455", "accession": "GCA_007341385.1", "taxid": 1393049, "species_taxid": 1393049, "relation_to_type": "type", "validated": true, "ani": 86.8809, "matched_fragments": 1261, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cutihirudinis", "strain": "strain=DSM 25795", "accession": "GCA_003385895.1", "taxid": 1265740, "species_taxid": 1265740, "relation_to_type": "type", "validated": true, "ani": 85.9263, "matched_fragments": 1129, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 84.1865, "matched_fragments": 1056, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 83.9168, "matched_fragments": 1115, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 83.6197, "matched_fragments": 1101, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 83.4691, "matched_fragments": 1044, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crocinum", "strain": "strain=HYN0056", "accession": "GCA_003122385.1", "taxid": 2183896, "species_taxid": 2183896, "relation_to_type": "type", "validated": true, "ani": 83.4182, "matched_fragments": 1095, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 83.3885, "matched_fragments": 1072, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=LMG 26360", "accession": "GCA_001602525.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 83.1231, "matched_fragments": 1083, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009711135.1", "gtdb_species": "s__Flavobacterium sp009711135", "ani": 87.83, "matched_fragments": 1399, "total_fragments": 1658, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004352915.1", "gtdb_species": "s__Flavobacterium zhairuonense", "ani": 87.8227, "matched_fragments": 1375, "total_fragments": 1658, "gtdb_taxonomy": 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