{
    "type": "genome",
    "identifier": "GCF_009684755.1",
    "organism": "Capnocytophaga felis",
    "title": "Capnocytophaga felis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Infectious Diseases",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009684755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00129980",
        "wgs_master": "BLBC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2267611",
        "species_taxid": "2267611",
        "organism_name": "Capnocytophaga felis",
        "infraspecific_name": "strain=KC07070",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/13",
        "asm_name": "ASM968475v1",
        "asm_submitter": "National Institute of Infectious Diseases",
        "gbrs_paired_asm": "GCA_009684755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/684/755/GCF_009684755.1_ASM968475v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2882901",
        "genome_size_ungapped": "2882673",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009684755.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "2581",
        "protein_coding_gene_count": "2513",
        "non_coding_gene_count": "46",
        "pubmed_id": "32375938"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-13",
    "dateModified": "2019-11-13",
    "datePublished": "2019-11-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga felis"
        ],
        "sample_taxid": [
            "2267611"
        ],
        "sample_host_organism": [
            "Felis catus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Kanagawa"
        ],
        "sample_host_location_id": [],
        "data_size": "0.805 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2882901",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "833046",
        "N50 (bp)": "218732",
        "Gap Ratio (%)": "0.007978",
        "GCcontent (%)": "35.6",
        "Number of CDSs": "2471",
        "Average Protein Length": "337.9",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Capnocytophaga felis",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 939,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga cynodegmi",
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                "accession": "GCA_000379185.1",
                "taxid": 28189,
                "species_taxid": 28189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5794,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 28188,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
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                "species_taxid": 28188,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 267,
                "total_fragments": 941,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=DSM 19204",
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                "species_taxid": 28188,
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                "ani": 80.8177,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canis",
                "strain": "strain=CcD38",
                "accession": "GCA_000827555.1",
                "taxid": 1848903,
                "species_taxid": 1848903,
                "relation_to_type": "type",
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                "ani": 80.0961,
                "matched_fragments": 253,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium sufflavum",
                "strain": "strain=BBQ-12",
                "accession": "GCA_004016525.1",
                "taxid": 1921138,
                "species_taxid": 1921138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9066,
                "matched_fragments": 55,
                "total_fragments": 941,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium bizetiae",
                "strain": "strain=CIP 105534",
                "accession": "GCA_902804475.1",
                "taxid": 2704140,
                "species_taxid": 2704140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6333,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium bizetiae",
                "strain": "strain=CIP 105534",
                "accession": "GCA_904425415.1",
                "taxid": 2704140,
                "species_taxid": 2704140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4923,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_009684755.1",
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                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.93",
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                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
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                "accession": "GCF_002302635.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
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                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.65",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "felis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}