{
    "type": "genome",
    "identifier": "GCF_009687825.1",
    "organism": "Deinococcus kurensis",
    "title": "Deinococcus kurensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009687825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00192131",
        "wgs_master": "BLBE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2662757",
        "species_taxid": "2662757",
        "organism_name": "Deinococcus kurensis",
        "infraspecific_name": "strain=KR1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/13",
        "asm_name": "ASM968782v1",
        "asm_submitter": "Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology",
        "gbrs_paired_asm": "GCA_009687825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/687/825/GCF_009687825.1_ASM968782v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4556772",
        "genome_size_ungapped": "4556772",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009687825.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4537",
        "protein_coding_gene_count": "4438",
        "non_coding_gene_count": "66",
        "pubmed_id": "32342124"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-13",
    "dateModified": "2019-11-13",
    "datePublished": "2019-11-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deinococcus kurensis"
        ],
        "sample_taxid": [
            "2662757"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Hiroshima, Kure"
        ],
        "sample_host_location_id": [],
        "data_size": "1.227 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4556772",
        "Number of Sequences": "7",
        "Longest Sequences (bp)": "3333173",
        "N50 (bp)": "3333173",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.0",
        "Number of CDSs": "4528",
        "Average Protein Length": "300.3",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "8",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Deinococcus kurensis",
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                "accession": "GCA_009687825.1",
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                "species_taxid": 2662757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1515,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Deinococcus arenae",
                "strain": "strain=JCM 31047",
                "accession": "GCA_014647995.1",
                "taxid": 1452751,
                "species_taxid": 1452751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.8424,
                "matched_fragments": 1263,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Deinococcus actinosclerus",
                "strain": "strain=BM2",
                "accession": "GCA_001507665.1",
                "taxid": 1768108,
                "species_taxid": 1768108,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.2336,
                "matched_fragments": 1033,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Deinococcus soli (ex Cha et al. 2016)",
                "strain": "strain=N5",
                "accession": "GCA_001007995.1",
                "taxid": 1309411,
                "species_taxid": 1309411,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0898,
                "matched_fragments": 972,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus daejeonensis",
                "strain": "strain=JCM 16918",
                "accession": "GCA_014647175.1",
                "taxid": 1007098,
                "species_taxid": 1007098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4949,
                "matched_fragments": 1058,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus saudiensis",
                "strain": "strain=CGMCC 1.15089",
                "accession": "GCA_014640655.1",
                "taxid": 1765963,
                "species_taxid": 1765963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4322,
                "matched_fragments": 1091,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus radiotolerans",
                "strain": "strain=JCM 19173",
                "accession": "GCA_014647435.1",
                "taxid": 1309407,
                "species_taxid": 1309407,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3618,
                "matched_fragments": 1088,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus sedimenti",
                "strain": "strain=JCM 31405",
                "accession": "GCA_014648135.1",
                "taxid": 1867090,
                "species_taxid": 1867090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2149,
                "matched_fragments": 1094,
                "total_fragments": 1516,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001507665.1",
                "gtdb_species": "s__Deinococcus actinosclerus",
                "ani": 96.2329,
                "matched_fragments": 1033,
                "total_fragments": 1516,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.26",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001007995.1",
                "gtdb_species": "s__Deinococcus soli",
                "ani": 92.0967,
                "matched_fragments": 974,
                "total_fragments": 1516,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001485435.1",
                "gtdb_species": "s__Deinococcus grandis",
                "ani": 91.65,
                "matched_fragments": 1068,
                "total_fragments": 1516,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.88",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_013337115.1",
                "gtdb_species": "s__Deinococcus sp013337115",
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                "total_fragments": 1516,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014648135.1",
                "gtdb_species": "s__Deinococcus sedimenti",
                "ani": 90.224,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002198095.1",
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                "matched_fragments": 962,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus",
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                "mean_intra_species_ani": "99.28",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.051,
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        "coding_genes": 3268.576,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.3,
        "coccus_cell_shape": 0.7,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Deinococcus",
        "kurensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}