{ "type": "genome", "identifier": "GCF_009687865.1", "organism": "Acrocarpospora macrocephala", "title": "Acrocarpospora macrocephala", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009687865.1", "bioproject": "PRJNA224116", "biosample": "SAMD00189194", "wgs_master": "BLAE00000000.1", "refseq_category": "reference genome", "taxid": "150177", "species_taxid": "150177", "organism_name": "Acrocarpospora macrocephala", "infraspecific_name": "strain=NBRC 16266", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/15", "asm_name": "ASM968786v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_009687865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/687/865/GCF_009687865.1_ASM968786v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12100308", "genome_size_ungapped": "12077149", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "166", "contig_count": "166", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009687865.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "10814", "protein_coding_gene_count": "10593", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-15", "dateModified": "2019-11-15", "datePublished": "2019-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Acrocarpospora macrocephala" ], "sample_taxid": [ "150177" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "3.301 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12100308", "Number of Sequences": "166", "Longest Sequences (bp)": "352435", "N50 (bp)": "149317", "Gap Ratio (%)": "0.191392", "GCcontent (%)": "68.8", "Number of CDSs": "10703", "Average Protein Length": "332.9", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "78", "Number of CRISPRs": "16" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acrocarpospora macrocephala", "strain": "strain=NBRC 16266", "accession": "GCA_009687865.1", "taxid": 150177, "species_taxid": 150177, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3944, "total_fragments": 3956, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acrocarpospora pleiomorpha", "strain": "strain=NBRC 16267", "accession": "GCA_009687885.1", "taxid": 90975, "species_taxid": 90975, "relation_to_type": "type", "validated": true, "ani": 94.2419, "matched_fragments": 2962, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora corrugata", "strain": "strain=NBRC 13972", "accession": "GCA_009687845.1", "taxid": 35763, "species_taxid": 35763, "relation_to_type": "type", "validated": true, "ani": 88.1906, "matched_fragments": 2226, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora phusangensis", "strain": "strain=NBRC 108782", "accession": "GCA_016862995.1", "taxid": 1070424, "species_taxid": 1070424, "relation_to_type": "type", "validated": true, "ani": 87.5702, "matched_fragments": 2108, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora catenulata", "strain": "strain=H8750", "accession": "GCA_018476525.1", "taxid": 2836182, "species_taxid": 2836182, "relation_to_type": "type", "validated": true, "ani": 84.9988, "matched_fragments": 2111, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbidospora cretacea", "strain": "strain=NBRC 15474", "accession": "GCA_001570605.1", "taxid": 28444, "species_taxid": 28444, "relation_to_type": "type", "validated": true, "ani": 80.9612, "matched_fragments": 1559, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbidospora galbida", "strain": "strain=NEAU-GS14", "accession": "GCA_005233835.1", "taxid": 2575442, "species_taxid": 2575442, "relation_to_type": "type", "validated": true, "ani": 80.9564, "matched_fragments": 1517, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbidospora sakaeratensis", "strain": "strain=NBRC 102641", "accession": "GCA_001570525.1", "taxid": 564415, "species_taxid": 564415, "relation_to_type": "type", "validated": true, "ani": 80.938, "matched_fragments": 1605, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerimonospora thailandensis", "strain": "strain=NBRC 107569", "accession": "GCA_016863115.1", "taxid": 795644, "species_taxid": 795644, "relation_to_type": "type", "validated": true, "ani": 79.4313, "matched_fragments": 903, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora oryzae", "strain": "strain=RL4-1S", "accession": "GCA_017896165.1", "taxid": 2806554, "species_taxid": 2806554, "relation_to_type": "type", "validated": true, "ani": 79.3768, "matched_fragments": 1143, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 79.3143, "matched_fragments": 852, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 78.9321, "matched_fragments": 1353, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 78.9282, "matched_fragments": 1347, "total_fragments": 3956, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.31, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_009687865.1", "gtdb_species": "s__Acrocarpospora macrocephala", "ani": 100.0, "matched_fragments": 3944, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009687885.1", "gtdb_species": "s__Acrocarpospora pleiomorpha", "ani": 94.2406, "matched_fragments": 2962, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009687845.1", "gtdb_species": "s__Acrocarpospora corrugata", "ani": 88.2067, "matched_fragments": 2223, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862995.1", "gtdb_species": "s__Acrocarpospora phusangensis", "ani": 87.5585, "matched_fragments": 2109, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018476525.1", "gtdb_species": "s__Acrocarpospora sp018476525", "ani": 85.0373, "matched_fragments": 2101, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Acrocarpospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001570565.1", "gtdb_species": "s__Herbidospora yilanensis", "ani": 81.0018, "matched_fragments": 1534, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Herbidospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001570605.1", "gtdb_species": "s__Herbidospora cretacea", "ani": 80.9814, "matched_fragments": 1552, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Herbidospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005233835.1", "gtdb_species": "s__Herbidospora galbida", "ani": 80.9571, "matched_fragments": 1515, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Herbidospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001570525.1", "gtdb_species": "s__Herbidospora sakaeratensis", "ani": 80.9311, "matched_fragments": 1607, "total_fragments": 3956, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Herbidospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 27.5, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Acrocarpospora", "macrocephala" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }