{
    "type": "genome",
    "identifier": "GCF_009688985.1",
    "organism": "Desulfosarcina ovata subsp. sediminis",
    "title": "Desulfosarcina ovata subsp. sediminis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The Institute of Low Temperature Science, Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009688985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00190780",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "885957",
        "species_taxid": "83564",
        "organism_name": "Desulfosarcina ovata subsp. sediminis",
        "infraspecific_name": "strain=28bB2T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/13",
        "asm_name": "ASM968898v1",
        "asm_submitter": "The Institute of Low Temperature Science, Hokkaido University",
        "gbrs_paired_asm": "GCA_009688985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/688/985/GCF_009688985.1_ASM968898v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8413530",
        "genome_size_ungapped": "8413530",
        "gc_percent": "53.500000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009688985.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "7401",
        "protein_coding_gene_count": "7260",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-13",
    "dateModified": "2019-11-13",
    "datePublished": "2019-11-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfosarcina ovata subsp. sediminis"
        ],
        "sample_taxid": [
            "885957"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Tokyo;Tokyo Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "2.360 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8413530",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "8261151",
        "N50 (bp)": "8261151",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.7",
        "Number of CDSs": "7386",
        "Average Protein Length": "324.7",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfosarcina ovata subsp. sediminis",
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                "accession": "GCA_009688985.1",
                "taxid": 885957,
                "species_taxid": 83564,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2785,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Desulfosarcina ovata subsp. ovata",
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                "accession": "GCA_009689005.1",
                "taxid": 2752305,
                "species_taxid": 83564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9573,
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                "total_fragments": 2803,
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                "status": "conclusive"
            },
            {
                "organism_name": "Desulfosarcina cetonica",
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                "species_taxid": 90730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6088,
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                "total_fragments": 2803,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosarcina alkanivorans",
                "strain": "strain=PL12",
                "accession": "GCA_009688945.1",
                "taxid": 571177,
                "species_taxid": 571177,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8023,
                "matched_fragments": 667,
                "total_fragments": 2803,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosarcina widdelii",
                "strain": "strain=PP31",
                "accession": "GCA_009688965.1",
                "taxid": 947919,
                "species_taxid": 947919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5684,
                "matched_fragments": 639,
                "total_fragments": 2803,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfospira joergensenii",
                "strain": "strain=DSM 10085",
                "accession": "GCA_000420085.1",
                "taxid": 53329,
                "species_taxid": 53329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3666,
                "matched_fragments": 92,
                "total_fragments": 2803,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009689005.1",
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                "ani": 96.9359,
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                "total_fragments": 2803,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.77",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001311845.1",
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                "matched_fragments": 1039,
                "total_fragments": 2803,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009688945.1",
                "gtdb_species": "s__Desulfosarcina alkanivorans",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014237405.1",
                "gtdb_species": "s__Desulfosarcina sp014237405",
                "ani": 78.6995,
                "matched_fragments": 494,
                "total_fragments": 2803,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
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            },
            {
                "accession": "GCF_009688965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_002352605.1",
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            },
            {
                "accession": "GCA_002747175.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__Desulfosarcina",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013003715.1",
                "gtdb_species": "s__JABDIN01 sp013003715",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfosarcinaceae;g__JABDIN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
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        "genome_size": 8021889.0,
        "gc_content": 53.774,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
        "Desulfosarcina",
        "ovata",
        "subsp.",
        "sediminis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}