{ "type": "genome", "identifier": "GCF_009690905.1", "organism": "Paraburkholderia madseniana", "title": "Paraburkholderia madseniana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009690905.1", "bioproject": "PRJNA224116", "biosample": "SAMN12491213", "wgs_master": "VOSW00000000.1", "refseq_category": "na", "taxid": "2599607", "species_taxid": "2599607", "organism_name": "Paraburkholderia madseniana", "infraspecific_name": "strain=RP11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/22", "asm_name": "ASM969090v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_009690905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/690/905/GCF_009690905.1_ASM969090v1", "excluded_from_refseq": "na", 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"USA:Turkey Hill" ], "sample_host_location_id": [], "data_size": "2.852 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10085209", "Number of Sequences": "385", "Longest Sequences (bp)": "341619", "N50 (bp)": "84344", "Gap Ratio (%)": "0.001686", "GCcontent (%)": "61.4", "Number of CDSs": "9012", "Average Protein Length": "307.3", "Coding Ratio (%)": "82.4", "Number of rRNAs": "2", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia madseniana", "strain": "strain=RP11", "accession": "GCA_009690905.1", "taxid": 2599607, "species_taxid": 2599607, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3190, "total_fragments": 3202, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 94.1738, "matched_fragments": 2175, "total_fragments": 3202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia aspalathi", "strain": "strain=LMG 27731", "accession": "GCA_900116445.1", "taxid": 1324617, "species_taxid": 1324617, "relation_to_type": "type", "validated": true, "ani": 94.0261, "matched_fragments": 2236, "total_fragments": 3202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sediminicola", "strain": "strain=LMG 24238", "accession": "GCA_902859805.1", "taxid": 458836, "species_taxid": 458836, "relation_to_type": "type", "validated": true, "ani": 93.6183, "matched_fragments": 2120, "total_fragments": 3202, "ani_threshold": 95, "status": 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