{
    "type": "genome",
    "identifier": "GCF_009695545.1",
    "organism": "Victivallis lenta",
    "title": "Victivallis lenta",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UniKlinik RWTH Aachen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009695545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12619173",
        "wgs_master": "VUNS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2606640",
        "species_taxid": "2606640",
        "organism_name": "Victivallis lenta",
        "infraspecific_name": "strain=BBE-744-WT-12",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/22",
        "asm_name": "ASM969554v1",
        "asm_submitter": "UniKlinik RWTH Aachen",
        "gbrs_paired_asm": "GCA_009695545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/695/545/GCF_009695545.1_ASM969554v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5545070",
        "genome_size_ungapped": "5545070",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "78",
        "contig_count": "78",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009695545.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "4613",
        "protein_coding_gene_count": "4528",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-22",
    "dateModified": "2019-11-22",
    "datePublished": "2019-11-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Victivallis lenta"
        ],
        "sample_taxid": [
            "2606640"
        ],
        "sample_host_organism": [
            "Sus scrofa (WT)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Freising"
        ],
        "sample_host_location_id": [],
        "data_size": "1.545 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5545070",
        "Number of Sequences": "78",
        "Longest Sequences (bp)": "503493",
        "N50 (bp)": "157075",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.3",
        "Number of CDSs": "4510",
        "Average Protein Length": "368.6",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Victivallis lenta",
                "strain": "strain=BBE-744-WT-12",
                "accession": "GCA_009695545.1",
                "taxid": 2606640,
                "species_taxid": 2606640,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1806,
                "total_fragments": 1809,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Victivallis vadensis",
                "strain": "strain=DSM 14823",
                "accession": "GCA_003096415.1",
                "taxid": 172901,
                "species_taxid": 172901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6764,
                "matched_fragments": 589,
                "total_fragments": 1809,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus exercitus",
                "strain": "strain=AB043A",
                "accession": "GCA_003611585.1",
                "taxid": 2316736,
                "species_taxid": 2316736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7456,
                "matched_fragments": 57,
                "total_fragments": 1809,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas aerophila",
                "strain": "strain=NBRC 108923",
                "accession": "GCA_014490485.1",
                "taxid": 1224513,
                "species_taxid": 1224513,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.742,
                "matched_fragments": 55,
                "total_fragments": 1809,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella namucuonensis",
                "strain": "strain=CGMCC 1.11014",
                "accession": "GCA_900116645.1",
                "taxid": 1035707,
                "species_taxid": 1035707,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7095,
                "matched_fragments": 80,
                "total_fragments": 1809,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009695545.1",
                "gtdb_species": "s__Victivallis lenta",
                "ani": 100.0,
                "matched_fragments": 1806,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018265615.1",
                "gtdb_species": "s__Victivallis sp018265615",
                "ani": 81.7529,
                "matched_fragments": 838,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096415.1",
                "gtdb_species": "s__Victivallis vadensis",
                "ani": 80.7035,
                "matched_fragments": 586,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900551245.1",
                "gtdb_species": "s__Victivallis sp900551245",
                "ani": 79.5988,
                "matched_fragments": 408,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900768515.1",
                "gtdb_species": "s__Victivallis sp900768515",
                "ani": 78.8039,
                "matched_fragments": 359,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900550905.1",
                "gtdb_species": "s__Victivallis sp900550905",
                "ani": 78.6117,
                "matched_fragments": 360,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__Victivallis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017450705.1",
                "gtdb_species": "s__UBA1784 sp017450705",
                "ani": 76.5091,
                "matched_fragments": 138,
                "total_fragments": 1809,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Lentisphaeria;o__Victivallales;f__Victivallaceae;g__UBA1784",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.302,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 5247392.0,
        "gc_content": 59.4,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Victivallis",
        "lenta"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}