{ "type": "genome", "identifier": "GCF_009695875.1", "organism": "Olsenella porci", "title": "Olsenella porci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UniKlinik RWTH Aachen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009695875.1", "bioproject": "PRJNA224116", "biosample": "SAMN12619156", "wgs_master": "VUNC00000000.1", "refseq_category": "reference genome", "taxid": "2652279", "species_taxid": "2652279", "organism_name": "Olsenella porci", "infraspecific_name": "strain=CA-Schmier-601-WT-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/22", "asm_name": "ASM969587v1", "asm_submitter": "UniKlinik RWTH Aachen", "gbrs_paired_asm": "GCA_009695875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/695/875/GCF_009695875.1_ASM969587v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2362135", "genome_size_ungapped": "2362135", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009695875.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2011", "protein_coding_gene_count": "1945", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-22", "dateModified": "2019-11-22", "datePublished": "2019-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Olsenella porci" ], "sample_taxid": [ "2652279" ], "sample_host_organism": [ "Sus scrofa (WT)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Freising" ], "sample_host_location_id": [], "data_size": "0.656 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2362135", "Number of Sequences": "15", "Longest Sequences (bp)": "621340", "N50 (bp)": "284696", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.9", "Number of CDSs": "2002", "Average Protein Length": "336.4", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Olsenella phocaeensis", "strain": "strain=Marseille-P2936", "accession": "GCA_900120385.1", "taxid": 1852385, "species_taxid": 1852385, "relation_to_type": "type", "validated": true, "ani": 80.5422, "matched_fragments": 304, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 80.3119, "matched_fragments": 283, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella urininfantis", "strain": "strain=Marseille-P3197", "accession": "GCA_900155635.1", "taxid": 1871033, "species_taxid": 1871033, "relation_to_type": "type", "validated": true, "ani": 79.8403, "matched_fragments": 237, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7943, "matched_fragments": 278, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7639, "matched_fragments": 279, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 79.5821, "matched_fragments": 256, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 79.4603, "matched_fragments": 263, "total_fragments": 779, "ani_threshold": 95, "status": "below_threshold" }, { 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