{
    "type": "genome",
    "identifier": "GCF_009696445.1",
    "organism": "Porcincola intestinalis",
    "title": "Porcincola intestinalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UniKlinik RWTH Aachen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009696445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12619123",
        "wgs_master": "VULZ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2606632",
        "species_taxid": "2606632",
        "organism_name": "Porcincola intestinalis",
        "infraspecific_name": "strain=Oil+RF-744-WCA-WT-11",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/22",
        "asm_name": "ASM969644v1",
        "asm_submitter": "UniKlinik RWTH Aachen",
        "gbrs_paired_asm": "GCA_009696445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/696/445/GCF_009696445.1_ASM969644v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3139978",
        "genome_size_ungapped": "3139978",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "31",
        "contig_count": "31",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009696445.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "2896",
        "protein_coding_gene_count": "2787",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-22",
    "dateModified": "2019-11-22",
    "datePublished": "2019-11-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Porcincola intestinalis"
        ],
        "sample_taxid": [
            "2606632"
        ],
        "sample_host_organism": [
            "Sus scrofa (WT)"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Freising"
        ],
        "sample_host_location_id": [],
        "data_size": "0.890 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3139978",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "442740",
        "N50 (bp)": "187405",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.0",
        "Number of CDSs": "2859",
        "Average Protein Length": "323.8",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Porcincola intestinalis",
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                "taxid": 2606632,
                "species_taxid": 2606632,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1028,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Clostridium vitabionis",
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                "accession": "GCA_015351765.1",
                "taxid": 2784388,
                "species_taxid": 2784388,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bilifractor porci",
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                "accession": "GCA_009696005.1",
                "taxid": 2606636,
                "species_taxid": 2606636,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 50,
                "total_fragments": 1031,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_009696445.1",
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                "num_clustered_genomes": 6,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Porcincola",
                "ani_circumscription_radius": 95.0,
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                "status": "-"
            },
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002482005.1",
                "gtdb_species": "s__Porcincola sp002482005",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Porcincola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Porcincola",
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                "mean_intra_species_ani": "98.95",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902781455.1",
                "gtdb_species": "s__Porcincola sp902781455",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Porcincola",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
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            {
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            },
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "vibrio_cell_shape": null,
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    },
    "_genome_taxon": [
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        "intestinalis"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}