{ "type": "genome", "identifier": "GCF_009696575.1", "organism": "Anaerococcus porci", "title": "Anaerococcus porci", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UniKlinik RWTH Aachen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009696575.1", "bioproject": "PRJNA224116", "biosample": "SAMN12619114", "wgs_master": "VULQ00000000.1", "refseq_category": "na", "taxid": "2652269", "species_taxid": "2652269", "organism_name": "Anaerococcus porci", "infraspecific_name": "strain=WCA-380-WT-2B", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/22", "asm_name": "ASM969657v1", "asm_submitter": "UniKlinik RWTH Aachen", "gbrs_paired_asm": "GCA_009696575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/696/575/GCF_009696575.1_ASM969657v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2226227", "genome_size_ungapped": "2226227", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-22", "total_gene_count": "2194", "protein_coding_gene_count": "2088", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-22", "dateModified": "2019-11-22", "datePublished": "2019-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerococcus porci" ], "sample_taxid": [ "2652269" ], "sample_host_organism": [ "Sus scrofa (WT)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Freising" ], "sample_host_location_id": [], "data_size": "0.608 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2226227", "Number of Sequences": "37", "Longest Sequences (bp)": "307805", "N50 (bp)": "165714", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.6", "Number of CDSs": "2122", "Average Protein Length": "306.4", "Coding Ratio (%)": "87.6", "Number of rRNAs": "5", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerococcus vaginalis", "strain": "strain=ATCC 51170", "accession": "GCA_000163295.1", "taxid": 33037, "species_taxid": 33037, "relation_to_type": "type", "validated": true, "ani": 81.0186, "matched_fragments": 322, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerococcus vaginalis", "strain": "strain=FDAARGOS_988", "accession": "GCA_016127475.1", "taxid": 33037, "species_taxid": 33037, "relation_to_type": "type", "validated": true, "ani": 80.988, "matched_fragments": 322, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerococcus ihuae", "strain": "strain=Marseille-Q5893", "accession": "GCA_928368155.1", "taxid": 2899519, "species_taxid": 2899519, "relation_to_type": "type", "validated": true, "ani": 80.6095, "matched_fragments": 300, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerococcus hydrogenalis", "strain": "strain=DSM 7454", "accession": "GCA_000173355.1", "taxid": 33029, "species_taxid": 33029, "relation_to_type": "type", "validated": true, "ani": 80.3486, "matched_fragments": 311, "total_fragments": 725, "ani_threshold": 95, "status": 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