{ "type": "genome", "identifier": "GCF_009697225.1", "organism": "Halovulum marinum", "title": "Halovulum marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009697225.1", "bioproject": "PRJNA224116", "biosample": "SAMN13106272", "wgs_master": "WIND00000000.1", "refseq_category": "reference genome", "taxid": "2662447", "species_taxid": "2662447", "organism_name": "Halovulum marinum", "infraspecific_name": "strain=2CG4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/22", "asm_name": "ASM969722v1", "asm_submitter": "Institute of Microbiology, CAS", "gbrs_paired_asm": "GCA_009697225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/697/225/GCF_009697225.1_ASM969722v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4633797", "genome_size_ungapped": "4633603", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009697225.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4612", "protein_coding_gene_count": "4444", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-22", "dateModified": "2019-11-22", "datePublished": "2019-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Halovulum marinum" ], "sample_taxid": [ "2662447" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean: Northwest Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.249 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4633797", "Number of Sequences": "74", "Longest Sequences (bp)": "622539", "N50 (bp)": "185293", "Gap Ratio (%)": "0.004424", "GCcontent (%)": "69.4", "Number of CDSs": "4522", "Average Protein Length": "306.8", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1508, "total_fragments": 1510, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 80.9038, "matched_fragments": 660, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 79.4095, "matched_fragments": 618, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 78.9747, "matched_fragments": 383, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_014645075.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 78.8298, "matched_fragments": 574, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 78.7909, "matched_fragments": 576, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=UST950701-009P", "accession": "GCA_000365005.1", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 78.7769, "matched_fragments": 485, "total_fragments": 1510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, 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