{ "type": "genome", "identifier": "GCF_009708005.2", "organism": "Cellulosimicrobium protaetiae", "title": "Cellulosimicrobium protaetiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience & Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009708005.2", "bioproject": "PRJNA224116", "biosample": "SAMN11982576", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2587808", "species_taxid": "2587808", "organism_name": "Cellulosimicrobium protaetiae", "infraspecific_name": "strain=BI34", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/18", "asm_name": "ASM970800v2", "asm_submitter": "Korea Research Institute of Bioscience & Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_009708005.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/708/005/GCF_009708005.2_ASM970800v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4784181", "genome_size_ungapped": "4784181", "gc_percent": "74.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "4155", "protein_coding_gene_count": "4075", "non_coding_gene_count": "63", "pubmed_id": "35348452" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-18", "dateModified": "2020-05-18", "datePublished": "2020-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulosimicrobium protaetiae" ], "sample_taxid": [ "2587808" ], "sample_host_organism": [ "wax moth" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeongeup" ], "sample_host_location_id": [], "data_size": "1.240 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4784181", "Number of Sequences": "2", "Longest Sequences (bp)": "4631595", "N50 (bp)": "4631595", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.9", "Number of CDSs": "4129", "Average Protein Length": "350.8", "Coding Ratio (%)": "90.8", "Number of rRNAs": "9", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": 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"GCA_014837295.1", "taxid": 2708133, "species_taxid": 2708133, "relation_to_type": "type", "validated": true, "ani": 83.3487, "matched_fragments": 962, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 81.5264, "matched_fragments": 872, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia enterophila", "strain": "strain=DSM 43852", "accession": "GCA_001692445.1", "taxid": 43678, "species_taxid": 43678, "relation_to_type": "type", "validated": true, "ani": 81.4237, "matched_fragments": 889, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 81.3729, "matched_fragments": 907, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 81.2894, "matched_fragments": 898, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 81.2558, "matched_fragments": 896, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 81.0512, "matched_fragments": 753, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 81.0133, "matched_fragments": 768, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.715, "matched_fragments": 694, "total_fragments": 1593, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 79.4363, "matched_fragments": 789, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.111, "cell_length": 0.039, "doubling_h": null, "growth_tmp": 29.333, "optimum_tmp": 29.333, "optimum_ph": 7.0, "genome_size": 4410392.528, "gc_content": 74.348, "coding_genes": 3965.5, "rRNA16S_genes": 3.0, "tRNA_genes": 52.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.333, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.5, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulosimicrobium", "protaetiae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }