{ "type": "genome", "identifier": "GCF_009709615.1", "organism": "Winogradskyella ouciana", "title": "Winogradskyella ouciana", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009709615.1", "bioproject": "PRJNA224116", "biosample": "SAMN12712148", "wgs_master": "WJYA00000000.1", "refseq_category": "reference genome", "taxid": "2608631", "species_taxid": "2608631", "organism_name": "Winogradskyella ouciana", "infraspecific_name": "strain=ZXX205", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/26", "asm_name": "ASM970961v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_009709615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/709/615/GCF_009709615.1_ASM970961v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3569541", "genome_size_ungapped": "3569541", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "341", "contig_count": "341", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009709615.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "3196", "protein_coding_gene_count": "3116", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-26", "dateModified": "2019-11-26", "datePublished": "2019-11-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella ouciana" ], "sample_taxid": [ "2608631" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.009 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.6, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3569541", "Number of Sequences": "341", "Longest Sequences (bp)": "829803", "N50 (bp)": "459655", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.5", "Number of CDSs": "3059", "Average Protein Length": "343.3", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1153, "total_fragments": 1153, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 79.5646, "matched_fragments": 520, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella flava", "strain": "strain=KCTC 52348", "accession": "GCA_014243395.1", "taxid": 1884876, "species_taxid": 1884876, "relation_to_type": "type", "validated": true, "ani": 79.243, "matched_fragments": 535, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ursingii", "strain": "strain=HL4150", "accession": "GCA_013403975.1", "taxid": 2686079, "species_taxid": 2686079, "relation_to_type": "type", "validated": true, "ani": 79.0587, "matched_fragments": 441, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 78.4992, "matched_fragments": 418, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 78.4326, "matched_fragments": 427, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 78.2197, "matched_fragments": 440, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella forsetii", "strain": "strain=HL857", "accession": "GCA_013394595.1", "taxid": 2686077, "species_taxid": 2686077, "relation_to_type": "type", "validated": true, "ani": 78.1967, "matched_fragments": 481, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 78.0471, "matched_fragments": 426, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella jejuensis", "strain": "strain=DSM 25330", "accession": "GCA_900129745.1", "taxid": 1089305, "species_taxid": 1089305, "relation_to_type": "type", "validated": true, "ani": 77.8356, "matched_fragments": 300, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 77.8285, "matched_fragments": 311, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wandonensis", "strain": "strain=CECT 8445", "accession": "GCA_004346845.1", "taxid": 1442586, "species_taxid": 1442586, "relation_to_type": "type", "validated": true, "ani": 77.8012, "matched_fragments": 313, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 77.5819, "matched_fragments": 261, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.5215, "matched_fragments": 213, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.3157, "matched_fragments": 217, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.186, "matched_fragments": 181, "total_fragments": 1153, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.115, 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