{ "type": "genome", "identifier": "GCF_009709675.1", "organism": "Agromyces bracchium", "title": "Agromyces bracchium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huzhou University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009709675.1", "bioproject": "PRJNA224116", "biosample": "SAMN13290123", "wgs_master": "WMLB00000000.1", "refseq_category": "reference genome", "taxid": "88376", "species_taxid": "88376", "organism_name": "Agromyces bracchium", "infraspecific_name": "strain=JCM 11433", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/26", "asm_name": "ASM970967v1", "asm_submitter": "Huzhou University", "gbrs_paired_asm": "GCA_009709675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/709/675/GCF_009709675.1_ASM970967v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4159874", "genome_size_ungapped": "4159874", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009709675.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3843", "protein_coding_gene_count": "3764", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-26", "dateModified": "2019-11-26", "datePublished": "2019-11-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Agromyces bracchium" ], "sample_taxid": [ "88376" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: estuary of the Shiira River" ], "sample_host_location_id": [], "data_size": "1.097 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4159874", "Number of Sequences": "47", "Longest Sequences (bp)": "383585", "N50 (bp)": "170580", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.5", "Number of CDSs": "3802", "Average Protein Length": "332.1", "Coding Ratio (%)": "91.0", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Agromyces bracchium", "strain": "strain=JCM 11433", "accession": "GCA_009709675.1", "taxid": 88376, "species_taxid": 88376, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1362, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 88373, "relation_to_type": "type", "validated": true, "ani": 91.6623, "matched_fragments": 1088, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces kandeliae", "strain": "strain=Q22", "accession": "GCA_009674665.1", "taxid": 2666141, "species_taxid": 2666141, "relation_to_type": "type", "validated": true, "ani": 89.4492, "matched_fragments": 1057, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces binzhouensis", "strain": "strain=CGMCC 4.7180", "accession": "GCA_004135055.1", "taxid": 1817495, "species_taxid": 1817495, "relation_to_type": "type", "validated": true, "ani": 89.3587, "matched_fragments": 690, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 85.7681, "matched_fragments": 865, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 85.6597, "matched_fragments": 961, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CPCC 202695", "accession": "GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 85.1047, "matched_fragments": 896, "total_fragments": 1362, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CCM 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