{ "type": "genome", "identifier": "GCF_009711205.1", "organism": "Paracoccus litorisediminis", "title": "Paracoccus litorisediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese center for disease control and prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009711205.1", "bioproject": "PRJNA224116", "biosample": "SAMN13324934", "wgs_master": "WMIG00000000.1", "refseq_category": "reference genome", "taxid": "2006130", "species_taxid": "2006130", "organism_name": "Paracoccus litorisediminis", "infraspecific_name": "strain=NBRC 112902", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/26", "asm_name": "ASM971120v1", "asm_submitter": "Chinese center for disease control and prevention", "gbrs_paired_asm": "GCA_009711205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/711/205/GCF_009711205.1_ASM971120v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5370867", "genome_size_ungapped": "5370867", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009711205.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5273", "protein_coding_gene_count": "5127", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-26", "dateModified": "2019-11-26", "datePublished": "2019-11-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus litorisediminis" ], "sample_taxid": [ "2006130" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.484 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5370867", "Number of Sequences": "72", "Longest Sequences (bp)": "1053558", "N50 (bp)": "220239", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "5205", "Average Protein Length": "307.6", "Coding Ratio (%)": "89.4", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus litorisediminis", "strain": "strain=NBRC 112902", "accession": "GCA_009711205.1", "taxid": 2006130, "species_taxid": 2006130, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1749, "total_fragments": 1753, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paracoccus ravus", "strain": "strain=YJ057", "accession": "GCA_004522175.1", "taxid": 2447760, "species_taxid": 2447760, "relation_to_type": "type", "validated": true, "ani": 84.4955, "matched_fragments": 923, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aestuariivivens", "strain": "strain=NBRC 111993", "accession": "GCA_009711225.1", "taxid": 1820333, "species_taxid": 1820333, "relation_to_type": "type", "validated": true, "ani": 84.1612, "matched_fragments": 1054, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 83.307, "matched_fragments": 755, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus limosus", "strain": "strain=JCM 17370", "accession": "GCA_009711185.1", "taxid": 913252, "species_taxid": 913252, "relation_to_type": "type", "validated": true, "ani": 83.1589, "matched_fragments": 803, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 82.9562, "matched_fragments": 760, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=DSM 413", "accession": "GCA_900100045.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 82.8058, "matched_fragments": 820, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=NBRC 102528", "accession": "GCA_007989485.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 82.7715, "matched_fragments": 821, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus yeei", "strain": "strain=ATCC BAA-599", "accession": "GCA_000622145.1", "taxid": 147645, "species_taxid": 147645, "relation_to_type": "type", "validated": true, "ani": 82.7325, "matched_fragments": 829, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 82.7069, "matched_fragments": 720, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_003633525.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 82.6725, "matched_fragments": 824, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_008824185.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 82.636, "matched_fragments": 821, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus laeviglucosivorans", "strain": "strain=DSM 100094", "accession": "GCA_900182695.1", "taxid": 1197861, "species_taxid": 1197861, "relation_to_type": "type", "validated": true, "ani": 82.5616, "matched_fragments": 827, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aminovorans", 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2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 79.9863, "matched_fragments": 631, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 79.6473, "matched_fragments": 587, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 78.9855, "matched_fragments": 496, "total_fragments": 1753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": 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