{
    "type": "genome",
    "identifier": "GCF_009720245.1",
    "organism": "Sphingomonas segetis",
    "title": "Sphingomonas segetis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbial Ecology and Resources",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009720245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13189925",
        "wgs_master": "WJSQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1104779",
        "species_taxid": "1104779",
        "organism_name": "Sphingomonas segetis",
        "infraspecific_name": "strain=YJ09",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/28",
        "asm_name": "ASM972024v1",
        "asm_submitter": "Institute of Microbial Ecology and Resources",
        "gbrs_paired_asm": "GCA_009720245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/720/245/GCF_009720245.1_ASM972024v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2861518",
        "genome_size_ungapped": "2861518",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "329",
        "contig_count": "329",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009720245.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3088",
        "protein_coding_gene_count": "2900",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-28",
    "dateModified": "2019-11-28",
    "datePublished": "2019-11-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingomonas segetis"
        ],
        "sample_taxid": [
            "1104779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Shinnan, Bigeum"
        ],
        "sample_host_location_id": [],
        "data_size": "0.792 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 28.0,
            "max": 28.0
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2861518",
        "Number of Sequences": "329",
        "Longest Sequences (bp)": "52401",
        "N50 (bp)": "15818",
        "Gap Ratio (%)": "0.000210",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "2578",
        "Average Protein Length": "292.4",
        "Coding Ratio (%)": "79.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphingomonas segetis",
                "strain": "strain=YJ09",
                "accession": "GCA_009720245.1",
                "taxid": 1104779,
                "species_taxid": 1104779,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 788,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingomonas lutea",
                "strain": "strain=KCTC 23642",
                "accession": "GCA_021497585.1",
                "taxid": 1045317,
                "species_taxid": 1045317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9031,
                "matched_fragments": 404,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas lutea",
                "strain": "strain=KCTC 23642",
                "accession": "GCA_014396785.1",
                "taxid": 1045317,
                "species_taxid": 1045317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.868,
                "matched_fragments": 405,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas mesophila",
                "strain": "strain=SYSUP0001",
                "accession": "GCA_003499275.1",
                "taxid": 2303576,
                "species_taxid": 2303576,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4084,
                "matched_fragments": 328,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas sinipercae",
                "strain": "strain=HDW15C",
                "accession": "GCA_011302055.1",
                "taxid": 2714944,
                "species_taxid": 2714944,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3082,
                "matched_fragments": 318,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas ginkgonis",
                "strain": "strain=HMF7854",
                "accession": "GCA_003970925.1",
                "taxid": 2315330,
                "species_taxid": 2315330,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.295,
                "matched_fragments": 364,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas ginsengisoli An et al. 2013",
                "strain": "strain=KACC 16858",
                "accession": "GCA_009363895.1",
                "taxid": 363835,
                "species_taxid": 363835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2687,
                "matched_fragments": 331,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas sabuli",
                "strain": "strain=sand1-3",
                "accession": "GCA_014352855.1",
                "taxid": 2764186,
                "species_taxid": 2764186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0774,
                "matched_fragments": 350,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas jaspsi",
                "strain": "strain=DSM 18422",
                "accession": "GCA_000585415.1",
                "taxid": 392409,
                "species_taxid": 392409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5335,
                "matched_fragments": 286,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingosinicella humi",
                "strain": "strain=QZX222",
                "accession": "GCA_003129465.1",
                "taxid": 2068657,
                "species_taxid": 2068657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3509,
                "matched_fragments": 251,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
                "strain": "strain=ZLT-5",
                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9984,
                "matched_fragments": 232,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingosinithalassobacter tenebrarum",
                "strain": "strain=zrk23",
                "accession": "GCA_011057975.1",
                "taxid": 2711215,
                "species_taxid": 2711215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7891,
                "matched_fragments": 193,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas folli",
                "strain": "strain=RHCKR7",
                "accession": "GCA_019429525.1",
                "taxid": 2862497,
                "species_taxid": 2862497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7485,
                "matched_fragments": 299,
                "total_fragments": 799,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009720245.1",
                "gtdb_species": "s__Sphingomicrobium sp009720245",
                "ani": 100.0,
                "matched_fragments": 788,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013361785.1",
                "gtdb_species": "s__Sphingomicrobium sp013361785",
                "ani": 81.4042,
                "matched_fragments": 381,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003097155.1",
                "gtdb_species": "s__Sphingomicrobium sp003097155",
                "ani": 81.0692,
                "matched_fragments": 483,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000620665.1",
                "gtdb_species": "s__Sphingomicrobium sp000620665",
                "ani": 80.7726,
                "matched_fragments": 436,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014873795.1",
                "gtdb_species": "s__Sphingomicrobium sp014873795",
                "ani": 80.0065,
                "matched_fragments": 393,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019247755.1",
                "gtdb_species": "s__Sphingomicrobium sp019247755",
                "ani": 79.9698,
                "matched_fragments": 282,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019242355.1",
                "gtdb_species": "s__Sphingomicrobium sp019242355",
                "ani": 79.9039,
                "matched_fragments": 327,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014396785.1",
                "gtdb_species": "s__Sphingomicrobium lutea",
                "ani": 79.868,
                "matched_fragments": 405,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902806275.1",
                "gtdb_species": "s__Sphingomicrobium sp902806275",
                "ani": 79.3971,
                "matched_fragments": 242,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011302055.1",
                "gtdb_species": "s__Sphingomicrobium sinipercae",
                "ani": 79.3161,
                "matched_fragments": 317,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014873475.1",
                "gtdb_species": "s__Sphingomicrobium sp014873475",
                "ani": 79.0804,
                "matched_fragments": 356,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013816595.1",
                "gtdb_species": "s__Sphingomicrobium sp013816595",
                "ani": 78.6793,
                "matched_fragments": 259,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011057975.1",
                "gtdb_species": "s__Sphingomonas sp011057975",
                "ani": 77.806,
                "matched_fragments": 192,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003432385.1",
                "gtdb_species": "s__Breoghania sp003432385",
                "ani": 76.6561,
                "matched_fragments": 84,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Breoghania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002423025.1",
                "gtdb_species": "s__Polymorphobacter sp002423025",
                "ani": 76.2615,
                "matched_fragments": 82,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Polymorphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002701395.1",
                "gtdb_species": "s__Rhodobacter_B sp002701395",
                "ani": 75.8908,
                "matched_fragments": 63,
                "total_fragments": 799,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.288,
        "cell_length": 0.14,
        "doubling_h": null,
        "growth_tmp": 28.338,
        "optimum_tmp": 28.407,
        "optimum_ph": 7.016,
        "genome_size": 4164406.103,
        "gc_content": 66.116,
        "coding_genes": 4592.69,
        "rRNA16S_genes": 2.285,
        "tRNA_genes": 51.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.586,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.98,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.019
    },
    "_genome_taxon": [
        "Sphingomonas",
        "segetis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}