{ "type": "genome", "identifier": "GCF_009720545.1", "organism": "Gimesia maris", "title": "Gimesia maris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009720545.1", "bioproject": "PRJNA224116", "biosample": "SAMN12726143", "wgs_master": "na", "refseq_category": "na", "taxid": "122", "species_taxid": "122", "organism_name": "Gimesia maris", "infraspecific_name": "strain=DSM 8797", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/29", "asm_name": "ASM972054v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_009720545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/720/545/GCF_009720545.1_ASM972054v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7818248", "genome_size_ungapped": "7818248", "gc_percent": "50.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009720545.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "6004", "protein_coding_gene_count": "5861", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-29", "dateModified": "2019-11-29", "datePublished": "2019-11-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Gimesia maris" ], "sample_taxid": [ "122" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean: Northwest Indian Ocean" ], "sample_host_location_id": [], "data_size": "2.217 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7818248", "Number of Sequences": "1", "Longest Sequences (bp)": "7818248", "N50 (bp)": "7818248", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.4", "Number of CDSs": "6075", "Average Protein Length": "367.4", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gimesia maris", "strain": "strain=DSM 8797", "accession": "GCA_009720545.1", "taxid": 122, "species_taxid": 122, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2606, "total_fragments": 2606, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gimesia maris", "strain": "strain=DSM 8797", "accession": "GCA_008298035.1", "taxid": 122, "species_taxid": 122, "relation_to_type": "type", "validated": true, "ani": 99.9943, "matched_fragments": 2606, "total_fragments": 2606, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gimesia maris", "strain": "strain=DSM 8797", "accession": "GCA_000181475.1", "taxid": 122, "species_taxid": 122, "relation_to_type": "type", "validated": true, "ani": 99.9564, "matched_fragments": 2526, "total_fragments": 2606, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gimesia algae", "strain": "strain=Pan161", "accession": "GCA_007746795.1", "taxid": 2527971, "species_taxid": 2527971, "relation_to_type": "type", "validated": true, "ani": 87.8695, "matched_fragments": 2138, "total_fragments": 2606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gimesia fumaroli", "strain": "strain=Enr17", "accession": "GCA_007754425.1", "taxid": 2527976, 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78.7131, "matched_fragments": 1058, "total_fragments": 2606, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Gimesia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009720525.1", "gtdb_species": "s__Gimesia benthica", "ani": 78.6882, "matched_fragments": 971, "total_fragments": 2606, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Planctomycetales;f__Planctomycetaceae;g__Gimesia", "ani_circumscription_radius": 95.0249, "mean_intra_species_ani": "95.18", "min_intra_species_ani": "95.18", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008329715.1", "gtdb_species": "s__Gimesia chilikensis", "ani": 78.5113, "matched_fragments": 979, 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"coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gimesia", "maris" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }