{ "type": "genome", "identifier": "GCF_009720865.1", "organism": "Pseudoduganella ginsengisoli", "title": "Pseudoduganella ginsengisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009720865.1", "bioproject": "PRJNA224116", "biosample": "SAMN13282855", "wgs_master": "WNLA00000000.1", "refseq_category": "reference genome", "taxid": "1462440", "species_taxid": "1462440", "organism_name": "Pseudoduganella ginsengisoli", "infraspecific_name": "strain=KCTC 42409", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/30", "asm_name": "ASM972086v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_009720865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/720/865/GCF_009720865.1_ASM972086v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7031378", "genome_size_ungapped": "7031378", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "140", "contig_count": "140", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009720865.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "6172", "protein_coding_gene_count": "5991", "non_coding_gene_count": "129", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-30", "dateModified": "2019-11-30", "datePublished": "2019-11-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoduganella ginsengisoli" ], "sample_taxid": [ "1462440" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.954 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7031378", "Number of Sequences": "140", "Longest Sequences (bp)": "1076785", "N50 (bp)": "214763", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.8", "Number of CDSs": "5899", "Average Protein Length": "355.4", "Coding Ratio (%)": "89.5", "Number of rRNAs": "0", "Number of tRNAs": "93", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoduganella ginsengisoli", "strain": "strain=KCTC 42409", "accession": "GCA_009720865.1", "taxid": 1462440, "species_taxid": 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"total_fragments": 2294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella violacea", "strain": "strain=CECT 8897", "accession": "GCA_014191875.1", "taxid": 1715466, "species_taxid": 1715466, "relation_to_type": "type", "validated": true, "ani": 79.9902, "matched_fragments": 906, "total_fragments": 2294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella guangdongensis", "strain": "strain=DS3", "accession": "GCA_009857475.1", "taxid": 2692179, "species_taxid": 2692179, "relation_to_type": "type", "validated": true, "ani": 79.8506, "matched_fragments": 881, "total_fragments": 2294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella alba", "strain": "strain=FT9W", "accession": "GCA_009674495.1", "taxid": 2666081, "species_taxid": 2666081, "relation_to_type": "type", "validated": true, "ani": 79.7587, "matched_fragments": 917, "total_fragments": 2294, "ani_threshold": 95, "status": 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"strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009720865.1", "gtdb_species": "s__Pseudoduganella ginsengisoli", "ani": 100.0, "matched_fragments": 2291, "total_fragments": 2294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009674485.1", "gtdb_species": "s__Pseudoduganella sp009674485", "ani": 86.9813, "matched_fragments": 1785, "total_fragments": 2294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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