{ "type": "genome", "identifier": "GCF_009727155.1", "organism": "Pseudoduganella dura", "title": "Pseudoduganella dura", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Tuebingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009727155.1", "bioproject": "PRJNA224116", "biosample": "SAMN13268562", "wgs_master": "WNWM00000000.1", "refseq_category": "reference genome", "taxid": "321982", "species_taxid": "321982", "organism_name": "Pseudoduganella dura", "infraspecific_name": "strain=DSM 17513", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/03", "asm_name": "ASM972715v1", "asm_submitter": "University of Tuebingen", "gbrs_paired_asm": "GCA_009727155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/727/155/GCF_009727155.1_ASM972715v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6952347", "genome_size_ungapped": "6952347", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009727155.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5980", "protein_coding_gene_count": "5805", "non_coding_gene_count": "124", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-03", "dateModified": "2019-12-03", "datePublished": "2019-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoduganella dura" ], "sample_taxid": [ "321982" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:suburb of Nanjing, Jiangsu Province" ], "sample_host_location_id": [], "data_size": "1.894 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6952347", "Number of Sequences": "2", "Longest Sequences (bp)": "6913453", "N50 (bp)": "6913453", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.6", "Number of CDSs": "5854", "Average Protein Length": "352.2", "Coding Ratio (%)": "89.0", "Number of rRNAs": "28", "Number of tRNAs": "100", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoduganella dura", "strain": "strain=DSM 17513", "accession": "GCA_009727155.1", "taxid": 321982, "species_taxid": 321982, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2316, "total_fragments": 2316, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoduganella dura", "strain": "strain=KCTC 12342", "accession": "GCA_014651395.1", "taxid": 321982, "species_taxid": 321982, "relation_to_type": "type", "validated": true, "ani": 99.9609, "matched_fragments": 2227, "total_fragments": 2316, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoduganella albidiflava", "strain": "strain=DSM 17472", "accession": "GCA_004322755.1", "taxid": 321983, "species_taxid": 321983, "relation_to_type": "type", "validated": true, "ani": 87.6758, "matched_fragments": 1792, "total_fragments": 2316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella albidiflava", "strain": "strain=KCTC 12343", "accession": "GCA_014651415.1", "taxid": 321983, "species_taxid": 321983, "relation_to_type": "type", "validated": true, "ani": 87.543, "matched_fragments": 1788, "total_fragments": 2316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella umbonata", "strain": "strain=CECT 7753", "accession": "GCA_014192225.1", "taxid": 864828, "species_taxid": 864828, "relation_to_type": "type", "validated": true, "ani": 87.4863, "matched_fragments": 1788, "total_fragments": 2316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella lutea", "strain": "strain=DSM 17473", "accession": "GCA_004209755.1", "taxid": 321985, "species_taxid": 321985, "relation_to_type": "type", "validated": true, "ani": 87.2867, "matched_fragments": 1825, "total_fragments": 2316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella lurida", "strain": "strain=CGMCC 1.10822", "accession": "GCA_007830455.1", "taxid": 1036180, "species_taxid": 1036180, "relation_to_type": "type", "validated": true, "ani": 84.9624, "matched_fragments": 1493, "total_fragments": 2316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella buxea", 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sp002454505", "ani": 84.6866, "matched_fragments": 1349, "total_fragments": 2316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009720835.1", "gtdb_species": "s__Pseudoduganella buxea", "ani": 83.3911, "matched_fragments": 1349, "total_fragments": 2316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 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