{ "type": "genome", "identifier": "GCF_009733795.1", "organism": "Actinotalea caeni", "title": "Actinotalea caeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009733795.1", "bioproject": "PRJNA224116", "biosample": "SAMN13336169", "wgs_master": "WNXX00000000.1", "refseq_category": "reference genome", "taxid": "1348467", "species_taxid": "1348467", "organism_name": "Actinotalea caeni", "infraspecific_name": "strain=JCM 30447", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/06", "asm_name": "ASM973379v1", "asm_submitter": "China CDC", "gbrs_paired_asm": "GCA_009733795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/733/795/GCF_009733795.1_ASM973379v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4001341", "genome_size_ungapped": "4001341", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009733795.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3787", "protein_coding_gene_count": "3684", "non_coding_gene_count": "51", "pubmed_id": "27902298" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-06", "dateModified": "2019-12-06", "datePublished": "2019-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinotalea caeni" ], "sample_taxid": [ "1348467" ], "sample_host_organism": [ "none" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.042 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4001341", "Number of Sequences": "49", "Longest Sequences (bp)": "398144", "N50 (bp)": "169518", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.4", "Number of CDSs": "3691", "Average Protein Length": "328.9", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudactinotalea suaedae", "strain": "strain=KACC 17839", "accession": "GCA_009733815.1", "taxid": 1524924, "species_taxid": 1524924, "relation_to_type": "type", "validated": true, "ani": 82.5331, "matched_fragments": 923, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudactinotalea terrae", "strain": "strain=KACC 16542", "accession": "GCA_009733845.1", "taxid": 1743262, "species_taxid": 1743262, "relation_to_type": "type", "validated": true, "ani": 82.3102, "matched_fragments": 889, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 78.7872, "matched_fragments": 590, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella gossypii", "strain": "strain=N2-46", "accession": "GCA_019947135.1", "taxid": 2800820, "species_taxid": 2800820, "relation_to_type": "type", "validated": true, "ani": 78.7758, "matched_fragments": 617, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella kanbiaonis", "strain": "strain=HY164", "accession": "GCA_009708215.1", "taxid": 2675754, "species_taxid": 2675754, "relation_to_type": "type", "validated": true, "ani": 78.7331, "matched_fragments": 629, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella aeris", "strain": "strain=CIP 111667", "accession": "GCA_902703175.1", "taxid": 2761496, "species_taxid": 2761496, "relation_to_type": "type", "validated": true, "ani": 78.6745, "matched_fragments": 627, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 78.4225, "matched_fragments": 487, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania albidiflava", "strain": "strain=DSM 18029", "accession": "GCA_000421225.1", "taxid": 366586, "species_taxid": 366586, "relation_to_type": "type", "validated": true, "ani": 78.2184, "matched_fragments": 494, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.1877, "matched_fragments": 502, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 78.1809, "matched_fragments": 511, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia muralis", "strain": "strain=DSM 14418", "accession": "GCA_003814705.1", "taxid": 154117, "species_taxid": 154117, "relation_to_type": "type", "validated": true, "ani": 78.1539, "matched_fragments": 477, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania alba", "strain": "strain=DSM 21368", "accession": "GCA_900105765.1", "taxid": 648782, "species_taxid": 648782, "relation_to_type": "type", "validated": true, "ani": 78.1189, "matched_fragments": 448, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter suarezii", "strain": "strain=NBRC 16159", "accession": "GCA_001552735.1", "taxid": 60921, "species_taxid": 60921, "relation_to_type": "type", "validated": true, "ani": 78.0902, "matched_fragments": 381, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 78.0862, "matched_fragments": 523, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas timonensis", "strain": "strain=SN7", "accession": "GCA_900046455.1", "taxid": 1689271, "species_taxid": 1689271, "relation_to_type": "type", "validated": true, "ani": 78.0277, "matched_fragments": 436, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas oligotrophica", "strain": "strain=DSM 24482", "accession": "GCA_013409875.1", "taxid": 931536, "species_taxid": 931536, "relation_to_type": "type", "validated": true, "ani": 78.0249, "matched_fragments": 563, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 78.0194, "matched_fragments": 482, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 77.9995, "matched_fragments": 592, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 77.9423, "matched_fragments": 492, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=T26", "accession": "GCA_000767175.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 77.9362, "matched_fragments": 514, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9122, "matched_fragments": 559, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8996, "matched_fragments": 577, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=CGMCC 1.10786", "accession": "GCA_014636275.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 77.8719, "matched_fragments": 545, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraoerskovia marina", "strain": "strain=DSM 21750", "accession": "GCA_000701465.1", "taxid": 545619, "species_taxid": 545619, "relation_to_type": "type", "validated": true, "ani": 77.6292, "matched_fragments": 371, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rubrobrunea", "strain": "strain=NBRC 15275", "accession": "GCA_001552235.1", "taxid": 115335, "species_taxid": 115335, "relation_to_type": "type", "validated": true, "ani": 76.486, "matched_fragments": 431, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura geliboluensis", "strain": "strain=A8036", "accession": "GCA_005889745.1", "taxid": 882440, "species_taxid": 882440, "relation_to_type": "type", "validated": true, "ani": 76.178, "matched_fragments": 493, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009733795.1", "gtdb_species": "s__Pseudactinotalea caeni", "ani": 100.0, "matched_fragments": 1307, "total_fragments": 1309, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009733815.1", "gtdb_species": "s__Pseudactinotalea suaedae", "ani": 82.5594, "matched_fragments": 920, "total_fragments": 1309, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Beutenbergiaceae;g__Pseudactinotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009733845.1", 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