{
    "type": "genome",
    "identifier": "GCF_009733925.1",
    "organism": "Streptobacillus canis",
    "title": "Streptobacillus canis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Robert Koch Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009733925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13381658",
        "wgs_master": "WOEI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2678686",
        "species_taxid": "2678686",
        "organism_name": "Streptobacillus canis",
        "infraspecific_name": "strain=IHIT1603-19",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/12/06",
        "asm_name": "ASM973392v1",
        "asm_submitter": "Robert Koch Institute",
        "gbrs_paired_asm": "GCA_009733925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/733/925/GCF_009733925.1_ASM973392v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1597378",
        "genome_size_ungapped": "1597278",
        "gc_percent": "26.500000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009733925.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "1650",
        "protein_coding_gene_count": "1557",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-12-06",
    "dateModified": "2019-12-06",
    "datePublished": "2019-12-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptobacillus canis"
        ],
        "sample_taxid": [
            "2678686"
        ],
        "sample_host_organism": [
            "dog"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.432 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1597378",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "163207",
        "N50 (bp)": "44376",
        "Gap Ratio (%)": "0.006260",
        "GCcontent (%)": "26.6",
        "Number of CDSs": "1569",
        "Average Protein Length": "305.6",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptobacillus canis",
                "strain": "strain=IHIT1603-19",
                "accession": "GCA_009733925.1",
                "taxid": 2678686,
                "species_taxid": 2678686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 498,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptobacillus felis",
                "strain": "strain=131000547",
                "accession": "GCA_001559775.1",
                "taxid": 1384509,
                "species_taxid": 1384509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3645,
                "matched_fragments": 345,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptobacillus ratti",
                "strain": "strain=OGS16",
                "accession": "GCA_001891165.1",
                "taxid": 1720557,
                "species_taxid": 1720557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.691,
                "matched_fragments": 311,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptobacillus moniliformis",
                "strain": "strain=DSM 12112",
                "accession": "GCA_000024565.1",
                "taxid": 34105,
                "species_taxid": 34105,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1997,
                "matched_fragments": 335,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caviibacter abscessus",
                "strain": "strain=CCUG 39713",
                "accession": "GCA_001517835.1",
                "taxid": 1766719,
                "species_taxid": 1766719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.767,
                "matched_fragments": 110,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sneathia sanguinegens",
                "strain": "strain=CCUG41628",
                "accession": "GCA_001517935.1",
                "taxid": 40543,
                "species_taxid": 40543,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7589,
                "matched_fragments": 95,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=A25K",
                "accession": "GCA_900002825.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8833,
                "matched_fragments": 62,
                "total_fragments": 500,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009733925.1",
                "gtdb_species": "s__Streptobacillus canis",
                "ani": 100.0,
                "matched_fragments": 498,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001559775.1",
                "gtdb_species": "s__Streptobacillus felis",
                "ani": 84.4317,
                "matched_fragments": 343,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001891165.1",
                "gtdb_species": "s__Streptobacillus ratti",
                "ani": 83.6913,
                "matched_fragments": 311,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000024565.1",
                "gtdb_species": "s__Streptobacillus moniliformis",
                "ani": 83.2137,
                "matched_fragments": 334,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
                "accession": "GCF_001612575.1",
                "gtdb_species": "s__Streptobacillus notomytis",
                "ani": 83.1734,
                "matched_fragments": 305,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Streptobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018060185.1",
                "gtdb_species": "s__JAGOWQ01 sp018060185",
                "ani": 75.9792,
                "matched_fragments": 82,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__JAGOWQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.60",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000493815.1",
                "gtdb_species": "s__Fusobacterium nucleatum_E",
                "ani": 75.4036,
                "matched_fragments": 62,
                "total_fragments": 500,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 1506683.107,
        "gc_content": 24.925,
        "coding_genes": 1437.5,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 39.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Streptobacillus",
        "canis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}