{ "type": "genome", "identifier": "GCF_009734425.1", "organism": "Corynebacterium occultum", "title": "Corynebacterium occultum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uni Bielefeld", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009734425.1", "bioproject": "PRJNA224116", "biosample": "SAMN13284899", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2675219", "species_taxid": "2675219", "organism_name": "Corynebacterium occultum", "infraspecific_name": "strain=2039", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/09", "asm_name": "ASM973442v1", "asm_submitter": "Uni Bielefeld", "gbrs_paired_asm": "GCA_009734425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/734/425/GCF_009734425.1_ASM973442v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3218058", "genome_size_ungapped": "3218058", "gc_percent": "62.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009734425.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2928", "protein_coding_gene_count": "2816", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-09", "dateModified": "2019-12-09", "datePublished": "2019-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium occultum" ], "sample_taxid": [ "2675219" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Vilsendorf, Bielefeld" ], "sample_host_location_id": [], "data_size": "0.894 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3218058", "Number of Sequences": "2", "Longest Sequences (bp)": "3109186", "N50 (bp)": "3109186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "2932", "Average Protein Length": "318.4", "Coding Ratio (%)": "87.0", "Number of rRNAs": "18", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium occultum", "strain": "strain=2039", "accession": "GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1071, "total_fragments": 1072, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 79.8039, "matched_fragments": 492, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium comes", "strain": "strain=2019", "accession": "GCA_009734405.1", "taxid": 2675218, "species_taxid": 2675218, "relation_to_type": "type", "validated": true, "ani": 79.7565, "matched_fragments": 417, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium marinum", "strain": "strain=DSM 44953", "accession": "GCA_000835165.1", "taxid": 349751, "species_taxid": 349751, "relation_to_type": "type", "validated": true, "ani": 79.741, "matched_fragments": 404, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=DSM 45392", "accession": "GCA_000819445.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 79.5791, "matched_fragments": 397, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium marinum", "strain": "strain=CGMCC 1.6998", "accession": "GCA_014645275.1", "taxid": 349751, "species_taxid": 349751, "relation_to_type": "type", "validated": true, "ani": 79.552, "matched_fragments": 399, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 79.5472, "matched_fragments": 480, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pollutisoli", "strain": "strain=VDS11", "accession": "GCA_900177745.1", "taxid": 1610489, "species_taxid": 1610489, "relation_to_type": "type", "validated": true, "ani": 79.3228, "matched_fragments": 389, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 79.2971, "matched_fragments": 383, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium senegalense", "strain": "strain=Marseille-P4329", "accession": "GCA_900411315.1", "taxid": 2080750, "species_taxid": 2080750, "relation_to_type": "type", "validated": true, "ani": 78.362, "matched_fragments": 248, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 77.4408, "matched_fragments": 195, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009734425.1", "gtdb_species": "s__Corynebacterium sp009734425", "ani": 100.0, "matched_fragments": 1071, "total_fragments": 1072, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000341345.1", "gtdb_species": "s__Corynebacterium halotolerans", "ani": 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