{ "type": "genome", "identifier": "GCF_009739465.1", "organism": "Streptomyces apocyni", "title": "Streptomyces apocyni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tarim university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009739465.1", "bioproject": "PRJNA224116", "biosample": "SAMN13045849", "wgs_master": "WHOM00000000.1", "refseq_category": "reference genome", "taxid": "2654677", "species_taxid": "2654677", "organism_name": "Streptomyces apocyni", "infraspecific_name": "strain=TRM 66233", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/10", "asm_name": "ASM973946v1", "asm_submitter": "Tarim university", "gbrs_paired_asm": "GCA_009739465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/739/465/GCF_009739465.1_ASM973946v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7030968", "genome_size_ungapped": "7030450", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "78", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009739465.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6397", "protein_coding_gene_count": "6205", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-10", "dateModified": "2019-12-10", "datePublished": "2019-12-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces apocyni" ], "sample_taxid": [ "2654677" ], "sample_host_organism": [ "Apocynum hendersonii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.905 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 30.21, "strain_heterogeneity": 93.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7030968", "Number of Sequences": "78", "Longest Sequences (bp)": "662149", "N50 (bp)": "342607", "Gap Ratio (%)": "0.007623", "GCcontent (%)": "70.3", "Number of CDSs": "6358", "Average Protein Length": "323.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "8", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces apocyni", "strain": "strain=TRM 66233", "accession": "GCA_009739465.1", "taxid": 2654677, "species_taxid": 2654677, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2248, "total_fragments": 2313, 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