{ "type": "genome", "identifier": "GCF_009741275.1", "organism": "Winogradskyella endarachnes", "title": "Winogradskyella endarachnes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shantou University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009741275.1", "bioproject": "PRJNA224116", "biosample": "SAMN13439149", "wgs_master": "WOWS00000000.1", "refseq_category": "reference genome", "taxid": "2681965", "species_taxid": "2681965", "organism_name": "Winogradskyella endarachnes", "infraspecific_name": "strain=HL2-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/11", "asm_name": "ASM974127v1", "asm_submitter": "Shantou University", "gbrs_paired_asm": "GCA_009741275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/741/275/GCF_009741275.1_ASM974127v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3609432", "genome_size_ungapped": "3609432", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009741275.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3219", "protein_coding_gene_count": "3158", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-11", "dateModified": "2019-12-11", "datePublished": "2019-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella endarachnes" ], "sample_taxid": [ "2681965" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong" ], "sample_host_location_id": [], "data_size": "0.999 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3609432", "Number of Sequences": "55", "Longest Sequences (bp)": "1055795", "N50 (bp)": "826412", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.9", "Number of CDSs": "3144", "Average Protein Length": "342.8", "Coding Ratio (%)": "89.6", "Number of rRNAs": "2", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1186, "total_fragments": 1186, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 84.076, "matched_fragments": 903, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 82.7662, "matched_fragments": 807, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 80.4313, "matched_fragments": 705, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 80.3798, "matched_fragments": 677, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 80.1852, "matched_fragments": 646, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 80.1016, "matched_fragments": 672, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 79.9437, "matched_fragments": 649, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 79.851, "matched_fragments": 612, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 79.8456, "matched_fragments": 613, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.6275, "matched_fragments": 278, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.5308, "matched_fragments": 275, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.527, "matched_fragments": 222, "total_fragments": 1186, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013249065.1", "gtdb_species": "s__Winogradskyella litoriviva", "ani": 84.0702, "matched_fragments": 904, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013249045.1", "gtdb_species": "s__Winogradskyella eckloniae", "ani": 82.7488, "matched_fragments": 809, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386165.1", "gtdb_species": "s__Winogradskyella eximia", "ani": 80.9738, "matched_fragments": 718, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018860565.1", "gtdb_species": "s__Winogradskyella psychrotolerans_B", "ani": 80.5144, "matched_fragments": 705, "total_fragments": 1186, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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