{ "type": "genome", "identifier": "GCF_009741375.1", "organism": "Flavobacterium rakeshii", "title": "Flavobacterium rakeshii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009741375.1", "bioproject": "PRJNA224116", "biosample": "SAMN13439368", "wgs_master": "WOWP00000000.1", "refseq_category": "reference genome", "taxid": "1038845", "species_taxid": "1038845", "organism_name": "Flavobacterium rakeshii", "infraspecific_name": "strain=JCM 17928", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/11", "asm_name": "ASM974137v1", "asm_submitter": "Inner Mongolia University", "gbrs_paired_asm": "GCA_009741375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/741/375/GCF_009741375.1_ASM974137v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3896955", "genome_size_ungapped": "3896955", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009741375.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3581", "protein_coding_gene_count": "3512", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-11", "dateModified": "2019-12-11", "datePublished": "2019-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium rakeshii" ], "sample_taxid": [ "1038845" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.099 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3896955", "Number of Sequences": "64", "Longest Sequences (bp)": "316834", "N50 (bp)": "176591", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.6", "Number of CDSs": "3483", "Average Protein Length": "326.6", "Coding Ratio (%)": "87.6", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium rakeshii", "strain": "strain=JCM 17928", "accession": "GCA_009741375.1", "taxid": 1038845, "species_taxid": 1038845, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1266, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium beibuense", "strain": "strain=F44-8", "accession": "GCA_000769915.1", "taxid": 657326, "species_taxid": 657326, "relation_to_type": "type", "validated": true, "ani": 93.8673, "matched_fragments": 1061, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 82.449, "matched_fragments": 853, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cerinum", "strain": "strain=1E403", "accession": "GCA_004028155.1", "taxid": 2502784, "species_taxid": 2502784, "relation_to_type": "type", "validated": true, "ani": 78.2706, "matched_fragments": 371, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=DSM 21790", "accession": "GCA_000422725.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 77.9366, "matched_fragments": 300, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium arcticum", "strain": "strain=KCTC 42668", "accession": "GCA_004634185.1", "taxid": 1784713, "species_taxid": 1784713, "relation_to_type": "type", "validated": true, "ani": 77.8828, "matched_fragments": 294, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. altitudinum", "strain": "strain=LaA7.5", "accession": "GCA_010078225.1", "taxid": 2691899, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 77.7553, "matched_fragments": 323, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium coralii", "strain": "strain=D11R37", "accession": "GCA_019891545.1", "taxid": 2838017, "species_taxid": 2838017, "relation_to_type": "type", "validated": true, "ani": 77.6873, "matched_fragments": 286, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zepuense", "strain": "strain=ZT4R6", "accession": "GCA_007097145.1", "taxid": 2593302, "species_taxid": 2593302, "relation_to_type": "type", "validated": true, "ani": 77.5868, "matched_fragments": 321, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", "validated": true, "ani": 77.5569, "matched_fragments": 239, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 77.1787, "matched_fragments": 149, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=IK-1", "accession": "GCA_001278115.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 77.1037, "matched_fragments": 268, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=DSM 25510", "accession": "GCA_900115875.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 77.0857, "matched_fragments": 265, "total_fragments": 1266, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000769915.1", "gtdb_species": "s__Flavobacterium beibuense", "ani": 93.8644, "matched_fragments": 1062, "total_fragments": 1266, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008000935.1", "gtdb_species": "s__Flavobacterium alkalisoli", "ani": 82.4394, "matched_fragments": 854, "total_fragments": 1266, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"cell_diameter": 0.146, "cell_length": 0.477, "doubling_h": 1.271, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 8.0, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "rakeshii" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }