{ "type": "genome", "identifier": "GCF_009741445.1", "organism": "Mycobacterium avium subsp. avium", "title": "Mycobacterium avium subsp. avium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Leibniz Institute DSMZ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009741445.1", "bioproject": "PRJNA224116", "biosample": "SAMN13352280", "wgs_master": "na", "refseq_category": "na", "taxid": "44454", "species_taxid": "1764", "organism_name": "Mycobacterium avium subsp. avium", "infraspecific_name": "strain=DSM 44156", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/11", "asm_name": "ASM974144v1", "asm_submitter": "Leibniz Institute DSMZ", "gbrs_paired_asm": "GCA_009741445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/741/445/GCF_009741445.1_ASM974144v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4956929", "genome_size_ungapped": "4956929", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009741445.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "4653", "protein_coding_gene_count": "4447", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-11", "dateModified": "2019-12-11", "datePublished": "2019-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium avium subsp. avium" ], "sample_taxid": [ "44454" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "1.338 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4956929", "Number of Sequences": "1", "Longest Sequences (bp)": "4956929", "N50 (bp)": "4956929", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "4670", "Average Protein Length": "326.6", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1649, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=KCTC 29084", "accession": "GCA_002104735.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7915, "matched_fragments": 1411, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=JCM 30622", "accession": "GCA_010731935.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7765, "matched_fragments": 1459, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=MOTT64", "accession": "GCA_000276825.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7496, "matched_fragments": 1444, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_000172115.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 87.6967, "matched_fragments": 1265, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marseillense", "strain": "strain=JCM 17324", "accession": "GCA_010731675.1", "taxid": 701042, "species_taxid": 701042, "relation_to_type": "type", "validated": true, "ani": 87.1022, "matched_fragments": 1425, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marseillense", "strain": "strain=DSM 45437", "accession": "GCA_002086345.1", "taxid": 701042, "species_taxid": 701042, "relation_to_type": "type", "validated": true, "ani": 87.0951, "matched_fragments": 1392, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_000222105.4", "taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9867, "matched_fragments": 1447, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_002105755.1", "taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9866, "matched_fragments": 1452, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium mantenii", "strain": "strain=JCM 18113", "accession": "GCA_010731775.1", "taxid": 560555, "species_taxid": 560555, "relation_to_type": "type", "validated": true, "ani": 86.5384, "matched_fragments": 1411, "total_fragments": 1652, "ani_threshold": 95, 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