{ "type": "genome", "identifier": "GCF_009742705.1", "organism": "Auraticoccus cholistanensis", "title": "Auraticoccus cholistanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of the Punjab", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009742705.1", "bioproject": "PRJNA224116", "biosample": "SAMN13061169", "wgs_master": "WPCU00000000.1", "refseq_category": "reference genome", "taxid": "2656650", "species_taxid": "2656650", "organism_name": "Auraticoccus cholistanensis", "infraspecific_name": "strain=F435", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/11", "asm_name": "ASM974270v1", "asm_submitter": "University of the Punjab", "gbrs_paired_asm": "GCA_009742705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/742/705/GCF_009742705.1_ASM974270v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3801871", "genome_size_ungapped": "3782470", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009742705.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3550", "protein_coding_gene_count": "3443", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-11", "dateModified": "2019-12-11", "datePublished": "2019-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Auraticoccus cholistanensis" ], "sample_taxid": [ "2656650" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pakistan: Cholistan Desert" ], "sample_host_location_id": [], "data_size": "0.984 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3801871", "Number of Sequences": "18", "Longest Sequences (bp)": "873448", "N50 (bp)": "761725", "Gap Ratio (%)": "0.512748", "GCcontent (%)": "73.9", "Number of CDSs": "3465", "Average Protein Length": "335.4", "Coding Ratio (%)": "91.7", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Auraticoccus cholistanensis", "strain": "strain=F435", "accession": "GCA_009742705.1", "taxid": 2656650, "species_taxid": 2656650, "relation_to_type": "type", "validated": true, "ani": 99.9993, "matched_fragments": 1254, "total_fragments": 1260, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Auraticoccus monumenti", "strain": "strain=MON 2.2", "accession": "GCA_900101785.1", "taxid": 675864, "species_taxid": 675864, "relation_to_type": "type", "validated": true, "ani": 84.4049, "matched_fragments": 946, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 83.8126, "matched_fragments": 734, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 83.7061, "matched_fragments": 873, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella evansiae", "strain": "strain=NML 020265", "accession": "GCA_002250705.1", "taxid": 2016499, "species_taxid": 2016499, "relation_to_type": "type", "validated": true, "ani": 78.5783, "matched_fragments": 477, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus sagamiharensis", "strain": "strain=DSM 21743", "accession": "GCA_900105785.1", "taxid": 546874, "species_taxid": 546874, "relation_to_type": "type", "validated": true, "ani": 78.5643, "matched_fragments": 528, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 78.1272, "matched_fragments": 483, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Naumannella cuiyingiana", "strain": "strain=DSM 103164", "accession": "GCA_013408305.1", "taxid": 1347891, "species_taxid": 1347891, "relation_to_type": "type", "validated": true, "ani": 78.1238, "matched_fragments": 431, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rotundus", "strain": "strain=MCCC 1A10561", "accession": "GCA_019931675.1", "taxid": 1774216, "species_taxid": 1774216, "relation_to_type": "type", "validated": true, "ani": 77.6645, "matched_fragments": 398, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 77.269, "matched_fragments": 376, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.2571, "matched_fragments": 471, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 77.1881, "matched_fragments": 408, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 77.1579, "matched_fragments": 371, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 76.9914, "matched_fragments": 381, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009742705.1", "gtdb_species": "s__Auraticoccus cholistanensis", "ani": 99.9993, "matched_fragments": 1254, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Auraticoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900101785.1", "gtdb_species": "s__Auraticoccus monumenti", "ani": 84.3966, "matched_fragments": 947, "total_fragments": 1260, "gtdb_taxonomy": 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