{ "type": "genome", "identifier": "GCF_009745975.1", "organism": "Actinokineospora pegani", "title": "Actinokineospora pegani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tarim University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009745975.1", "bioproject": "PRJNA224116", "biosample": "SAMN13045092", "wgs_master": "WHOL00000000.1", "refseq_category": "reference genome", "taxid": "2654637", "species_taxid": "2654637", "organism_name": "Actinokineospora pegani", "infraspecific_name": "strain=TRM 65233", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/12", "asm_name": "ASM974597v1", "asm_submitter": "Tarim University", "gbrs_paired_asm": "GCA_009745975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/745/975/GCF_009745975.1_ASM974597v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6439512", "genome_size_ungapped": "6439305", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "128", "contig_count": "128", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009745975.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5852", "protein_coding_gene_count": "5698", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-12", "dateModified": "2019-12-12", "datePublished": "2019-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinokineospora pegani" ], "sample_taxid": [ "2654637" ], "sample_host_organism": [ "Peganum harmala" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.709 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6439512", "Number of Sequences": "128", "Longest Sequences (bp)": "362326", "N50 (bp)": "112219", "Gap Ratio (%)": "0.003960", "GCcontent (%)": "72.6", "Number of CDSs": "5775", "Average Protein Length": "320.9", "Coding Ratio (%)": "86.3", "Number of rRNAs": "5", "Number of tRNAs": "62", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinokineospora pegani", "strain": "strain=TRM 65233", "accession": "GCA_009745975.1", "taxid": 2654637, "species_taxid": 2654637, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2078, "total_fragments": 2089, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinokineospora spheciospongiae", "strain": "strain=EG49", "accession": "GCA_000564855.1", "taxid": 909613, "species_taxid": 909613, "relation_to_type": "type", "validated": true, "ani": 84.6074, "matched_fragments": 1411, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora bangkokensis", "strain": "strain=44EHW", "accession": "GCA_001940455.1", "taxid": 1193682, "species_taxid": 1193682, "relation_to_type": "type", "validated": true, "ani": 83.7705, "matched_fragments": 1363, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora baliensis", "strain": "strain=DSM 45656", "accession": "GCA_016907695.1", "taxid": 547056, "species_taxid": 547056, "relation_to_type": "type", "validated": true, "ani": 81.5633, "matched_fragments": 1061, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 81.5187, "matched_fragments": 1102, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora terrae", "strain": "strain=DSM 44260", "accession": "GCA_900111175.1", "taxid": 155974, "species_taxid": 155974, "relation_to_type": "type", "validated": true, "ani": 81.4988, "matched_fragments": 1108, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 81.486, "matched_fragments": 1096, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora alba", "strain": "strain=DSM 45114", "accession": "GCA_004362515.1", "taxid": 504798, "species_taxid": 504798, "relation_to_type": "type", "validated": true, "ani": 81.2313, "matched_fragments": 1008, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora auranticolor", "strain": "strain=YU 961-1", "accession": "GCA_002934265.1", "taxid": 155976, "species_taxid": 155976, "relation_to_type": "type", "validated": true, "ani": 81.1929, "matched_fragments": 1146, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 81.1451, "matched_fragments": 1080, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 81.0837, "matched_fragments": 1108, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora enzanensis", "strain": "strain=DSM 44649", "accession": "GCA_000374445.1", "taxid": 155975, "species_taxid": 155975, "relation_to_type": "type", "validated": true, "ani": 80.9812, "matched_fragments": 1069, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 78.892, "matched_fragments": 823, "total_fragments": 2089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": 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