{ "type": "genome", "identifier": "GCF_009746565.1", "organism": "Mariniflexile maritimum", "title": "Mariniflexile maritimum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009746565.1", "bioproject": "PRJNA224116", "biosample": "SAMN13441181", "wgs_master": "WRPN00000000.1", "refseq_category": "reference genome", "taxid": "2682493", "species_taxid": "2682493", "organism_name": "Mariniflexile maritimum", "infraspecific_name": "strain=M5A1M", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/13", "asm_name": "ASM974656v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_009746565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/746/565/GCF_009746565.1_ASM974656v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3659224", "genome_size_ungapped": "3659125", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009746565.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3173", "protein_coding_gene_count": "3103", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-13", "dateModified": "2019-12-13", "datePublished": "2019-12-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Mariniflexile maritimum" ], "sample_taxid": [ "2682493" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.024 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3659224", "Number of Sequences": "38", "Longest Sequences (bp)": "640922", "N50 (bp)": "292627", "Gap Ratio (%)": "0.002705", "GCcontent (%)": "37.8", "Number of CDSs": "3117", "Average Protein Length": "349.3", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mariniflexile maritimum", "strain": "strain=M5A1M", "accession": "GCA_009746565.1", "taxid": 2682493, "species_taxid": 2682493, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1198, "total_fragments": 1199, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 79.7955, "matched_fragments": 497, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 79.1548, "matched_fragments": 531, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter lentus", "strain": "strain=HJM-3", "accession": "GCA_002806995.1", "taxid": 1699412, "species_taxid": 1699412, "relation_to_type": "type", "validated": true, "ani": 78.2376, "matched_fragments": 324, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter citreus", "strain": "strain=XJNY", "accession": "GCA_002807055.1", "taxid": 2007307, "species_taxid": 2007307, "relation_to_type": "type", "validated": true, "ani": 78.1273, "matched_fragments": 320, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter flavum", "strain": "strain=3B", "accession": "GCA_002843175.1", "taxid": 1909700, "species_taxid": 1909700, "relation_to_type": "type", "validated": true, "ani": 78.041, "matched_fragments": 320, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter sediminis", "strain": "strain=DSL-48", "accession": "GCA_003258355.1", "taxid": 2219045, "species_taxid": 2219045, "relation_to_type": "type", "validated": true, "ani": 77.6756, "matched_fragments": 287, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomarina gelatinilytica", "strain": "strain=AK20", "accession": "GCA_000348685.1", "taxid": 1137281, "species_taxid": 1137281, "relation_to_type": "type", "validated": true, "ani": 77.2328, "matched_fragments": 177, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.2217, "matched_fragments": 143, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 77.1825, "matched_fragments": 92, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.1736, "matched_fragments": 116, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 77.0153, "matched_fragments": 175, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa sediminum", "strain": "strain=PS13", "accession": "GCA_007197735.1", "taxid": 2594004, "species_taxid": 2594004, "relation_to_type": "type", "validated": true, "ani": 76.9179, "matched_fragments": 130, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas yunxiaonensis", "strain": "strain=LY01", "accession": "GCA_000733475.1", "taxid": 1197477, "species_taxid": 1197477, "relation_to_type": "type", "validated": true, "ani": 76.8952, "matched_fragments": 138, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.8499, "matched_fragments": 152, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa agariphila", "strain": "strain=type strain: KMM 3901", "accession": "GCA_000723205.1", "taxid": 320324, "species_taxid": 320324, "relation_to_type": "type", "validated": true, "ani": 76.7842, "matched_fragments": 133, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens sediminis", "strain": "strain=S-DT1-15", "accession": "GCA_022662105.1", "taxid": 2913557, "species_taxid": 2913557, "relation_to_type": "type", "validated": true, "ani": 76.7147, "matched_fragments": 154, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas yunxiaonensis", "strain": "strain=CGMCC 1.12280", "accession": "GCA_014636995.1", "taxid": 1197477, "species_taxid": 1197477, "relation_to_type": "type", "validated": true, "ani": 76.7085, "matched_fragments": 140, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa algae", "strain": "strain=KMM 3553", "accession": "GCA_001439665.1", "taxid": 225843, "species_taxid": 225843, "relation_to_type": "type", "validated": true, "ani": 76.5632, "matched_fragments": 144, "total_fragments": 1199, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009746565.1", "gtdb_species": "s__Mariniflexile sp002426835", "ani": 100.0, "matched_fragments": 1198, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_017814435.1", "gtdb_species": "s__Mariniflexile gromovii", "ani": 79.7947, "matched_fragments": 497, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004341235.1", "gtdb_species": "s__Mariniflexile fucanivorans", "ani": 79.1456, "matched_fragments": 532, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003425985.1", "gtdb_species": "s__Mariniflexile sp002848895", "ani": 79.0788, "matched_fragments": 541, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mariniflexile", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002806995.1", "gtdb_species": "s__Confluentibacter lentus", "ani": 78.2376, "matched_fragments": 324, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002807055.1", "gtdb_species": "s__Confluentibacter citreus", "ani": 78.1319, "matched_fragments": 321, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000941055.1", "gtdb_species": "s__Siansivirga zeaxanthinifaciens", "ani": 78.0759, "matched_fragments": 328, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Siansivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000789235.1", "gtdb_species": "s__Wocania ichthyoenteri", "ani": 77.6885, "matched_fragments": 278, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wocania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002280395.1", "gtdb_species": "s__Confluentibacter sp002280395", "ani": 77.6817, "matched_fragments": 211, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003258355.1", "gtdb_species": "s__Confluentibacter sp003258355", "ani": 77.6762, "matched_fragments": 287, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Confluentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002426015.1", "gtdb_species": "s__Aquaticitalea sp002426015", "ani": 77.5063, "matched_fragments": 166, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquaticitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000348685.1", "gtdb_species": "s__Xanthomarina gelatinilytica", "ani": 77.2328, "matched_fragments": 177, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Xanthomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009796805.1", "gtdb_species": "s__Algibacter sp009796805", "ani": 77.2019, "matched_fragments": 248, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013249045.1", "gtdb_species": "s__Winogradskyella eckloniae", "ani": 77.1834, "matched_fragments": 91, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007197735.1", "gtdb_species": "s__Formosa sediminum", "ani": 76.9352, "matched_fragments": 130, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Formosa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000733475.1", "gtdb_species": "s__Mangrovimonas yunxiaonensis", "ani": 76.8619, "matched_fragments": 139, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Mangrovimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004115975.1", "gtdb_species": "s__Gelidibacter gilvus", "ani": 76.3127, "matched_fragments": 133, "total_fragments": 1199, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.519, "cell_length": 0.464, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 26.625, "optimum_ph": 7.25, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.25, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.75, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mariniflexile", "maritimum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }