{ "type": "genome", "identifier": "GCF_009746585.1", "organism": "Novosphingobium aquimarinum", "title": "Novosphingobium aquimarinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009746585.1", "bioproject": "PRJNA224116", "biosample": "SAMN13441224", "wgs_master": "WRPO00000000.1", "refseq_category": "reference genome", "taxid": "2682494", "species_taxid": "2682494", "organism_name": "Novosphingobium aquimarinum", "infraspecific_name": "strain=M24A2M", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/13", "asm_name": "ASM974658v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_009746585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/746/585/GCF_009746585.1_ASM974658v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4377191", "genome_size_ungapped": "4377191", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009746585.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4188", "protein_coding_gene_count": "4088", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-13", "dateModified": "2019-12-13", "datePublished": "2019-12-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium aquimarinum" ], "sample_taxid": [ "2682494" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.218 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4377191", "Number of Sequences": "57", "Longest Sequences (bp)": "421755", "N50 (bp)": "135471", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "4143", "Average Protein Length": "317.0", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, 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"validated": true, "ani": 79.9654, "matched_fragments": 554, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000767465.1", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 79.9297, "matched_fragments": 515, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000235975.2", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 79.8543, "matched_fragments": 515, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium malaysiense", "strain": "strain=MUSC 273", "accession": "GCA_000802225.1", "taxid": 1348853, "species_taxid": 1348853, "relation_to_type": "type", "validated": true, "ani": 79.7278, "matched_fragments": 528, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium mathurense", "strain": "strain=SM117", "accession": "GCA_900168325.1", "taxid": 428990, "species_taxid": 428990, "relation_to_type": "type", "validated": true, "ani": 79.7016, "matched_fragments": 507, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.3393, "matched_fragments": 404, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium colocasiae", "strain": "strain=KCTC 32255", "accession": "GCA_014652555.1", "taxid": 1256513, "species_taxid": 1256513, "relation_to_type": "type", "validated": true, "ani": 79.3392, "matched_fragments": 468, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.3232, "matched_fragments": 449, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 79.2947, "matched_fragments": 528, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 79.0699, "matched_fragments": 485, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.0389, "matched_fragments": 430, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.8954, "matched_fragments": 344, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.8851, "matched_fragments": 320, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 78.8847, "matched_fragments": 418, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gaetbuli", "strain": "strain=DSM 16225", "accession": "GCA_009827315.1", "taxid": 266952, "species_taxid": 266952, "relation_to_type": "type", "validated": true, "ani": 78.3156, "matched_fragments": 303, "total_fragments": 1431, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009746585.1", "gtdb_species": "s__Novosphingobium sp009746585", "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1431, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", 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