{ "type": "genome", "identifier": "GCF_009754905.2", "organism": "Mucilaginibacter ginkgonis", "title": "Mucilaginibacter ginkgonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009754905.2", "bioproject": "PRJNA224116", "biosample": "SAMN13425630", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2682091", "species_taxid": "2682091", "organism_name": "Mucilaginibacter ginkgonis", "infraspecific_name": "strain=HMF7856", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/07", "asm_name": "ASM975490v2", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_009754905.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/754/905/GCF_009754905.2_ASM975490v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3697784", "genome_size_ungapped": "3697784", "gc_percent": "44.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009754905.2-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3451", "protein_coding_gene_count": "3393", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-07", "dateModified": "2021-01-07", "datePublished": "2021-01-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter ginkgonis" ], "sample_taxid": [ "2682091" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yong-in" ], "sample_host_location_id": [], "data_size": "1.052 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3697784", "Number of Sequences": "1", "Longest Sequences (bp)": "3697784", "N50 (bp)": "3697784", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.9", "Number of CDSs": "3360", "Average Protein Length": "326.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "6", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter ginkgonis", "strain": "strain=HMF7856", "accession": "GCA_009754905.2", "taxid": 2682091, "species_taxid": 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156, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter aquatilis", "strain": "strain=HME9299", "accession": "GCA_009755275.1", "taxid": 1517760, "species_taxid": 1517760, "relation_to_type": "type", "validated": true, "ani": 77.2866, "matched_fragments": 131, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", "accession": "GCA_002013915.1", "taxid": 1792845, "species_taxid": 1792845, "relation_to_type": "type", "validated": true, "ani": 77.2643, "matched_fragments": 175, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter myungsuensis", "strain": "strain=KCTC 22746", "accession": "GCA_015222005.1", "taxid": 649104, "species_taxid": 649104, "relation_to_type": "type", "validated": true, "ani": 77.1226, "matched_fragments": 145, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter glaciei", "strain": "strain=ZB1P21", "accession": "GCA_014773245.1", "taxid": 2772109, "species_taxid": 2772109, "relation_to_type": "type", "validated": true, "ani": 77.1137, "matched_fragments": 171, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.1097, "matched_fragments": 182, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter kameinonensis", "strain": "strain=SCK", "accession": "GCA_003675385.1", "taxid": 452286, "species_taxid": 452286, "relation_to_type": "type", "validated": true, "ani": 77.0357, "matched_fragments": 163, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter psychrotolerans", "strain": "strain=NH7-4", "accession": "GCA_004519315.1", "taxid": 1524096, "species_taxid": 1524096, "relation_to_type": "type", "validated": true, "ani": 76.8946, "matched_fragments": 143, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 76.8516, "matched_fragments": 158, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrodurus", "strain": "strain=RP-3-21", "accession": "GCA_004331735.1", "taxid": 2530456, "species_taxid": 2530456, "relation_to_type": "type", "validated": true, "ani": 76.4768, "matched_fragments": 56, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ghigonis", "strain": "strain=Marseille-Q2390", "accession": "GCA_903166585.1", "taxid": 2730403, "species_taxid": 2730403, "relation_to_type": "type", "validated": true, "ani": 76.2269, "matched_fragments": 57, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009754905.2", "gtdb_species": "s__Mucilaginibacter ginkgonis", "ani": 100.0, "matched_fragments": 1231, "total_fragments": 1232, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009928685.1", "gtdb_species": "s__Mucilaginibacter sp009928685", "ani": 79.3542, 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