{ "type": "genome", "identifier": "GCF_009755225.1", "organism": "Hymenobacter ginkgonis", "title": "Hymenobacter ginkgonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009755225.1", "bioproject": "PRJNA224116", "biosample": "SAMN13439349", "wgs_master": "WQKZ00000000.1", "refseq_category": "reference genome", "taxid": "2682976", "species_taxid": "2682976", "organism_name": "Hymenobacter ginkgonis", "infraspecific_name": "strain=HMF4947", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/14", "asm_name": "ASM975522v1", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_009755225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/755/225/GCF_009755225.1_ASM975522v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5672745", "genome_size_ungapped": "5672745", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009755225.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4771", "protein_coding_gene_count": "4696", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-14", "dateModified": "2019-12-14", "datePublished": "2019-12-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter ginkgonis" ], "sample_taxid": [ "2682976" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yong-in" ], "sample_host_location_id": [], "data_size": "1.593 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5672745", "Number of Sequences": "38", "Longest Sequences (bp)": "1440275", "N50 (bp)": "1087678", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "4753", "Average Protein Length": "344.0", "Coding Ratio (%)": "86.5", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter ginkgonis", "strain": "strain=HMF4947", "accession": "GCA_009755225.1", "taxid": 2682976, "species_taxid": 2682976, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1878, "total_fragments": 1878, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter baengnokdamensis", "strain": "strain=BRD72", "accession": "GCA_008728635.1", "taxid": 2615203, "species_taxid": 2615203, "relation_to_type": "type", "validated": true, "ani": 81.4784, "matched_fragments": 968, "total_fragments": 1878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter setariae", "strain": "strain=Fur1", "accession": "GCA_007713685.1", "taxid": 2594794, "species_taxid": 2594794, "relation_to_type": "type", "validated": true, "ani": 81.0313, "matched_fragments": 1042, "total_fragments": 1878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter polaris", "strain": "strain=RP-2-7", "accession": "GCA_012927305.1", "taxid": 2682546, "species_taxid": 2682546, "relation_to_type": "type", "validated": true, "ani": 80.4805, "matched_fragments": 1061, "total_fragments": 1878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter caeli", "strain": "strain=9A", "accession": "GCA_013294115.1", "taxid": 2735894, "species_taxid": 2735894, "relation_to_type": "type", "validated": true, "ani": 79.6109, "matched_fragments": 804, "total_fragments": 1878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter nivis", "strain": "strain=NBRC 111535", "accession": "GCA_003149515.1", "taxid": 1850093, "species_taxid": 1850093, "relation_to_type": "type", "validated": true, "ani": 79.2493, "matched_fragments": 772, "total_fragments": 1878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 79.1774, "matched_fragments": 825, "total_fragments": 1878, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004684095.1", "gtdb_species": "s__Hymenobacter sp004684095", "ani": 82.3714, "matched_fragments": 1185, "total_fragments": 1878, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013256625.1", "gtdb_species": "s__Hymenobacter sp013256625", "ani": 82.0709, "matched_fragments": 1071, "total_fragments": 1878, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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