{ "type": "genome", "identifier": "GCF_009757775.1", "organism": "Paenibacillus lutrae", "title": "Paenibacillus lutrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Granada", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009757775.1", "bioproject": "PRJNA224116", "biosample": "SAMN10346769", "wgs_master": "RHLK00000000.1", "refseq_category": "reference genome", "taxid": "2078573", "species_taxid": "2078573", "organism_name": "Paenibacillus lutrae", "infraspecific_name": "strain=N10", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/16", "asm_name": "ASM975777v1", "asm_submitter": "University of Granada", "gbrs_paired_asm": "GCA_009757775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/757/775/GCF_009757775.1_ASM975777v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5538742", "genome_size_ungapped": "5538343", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009757775.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4939", "protein_coding_gene_count": "4745", "non_coding_gene_count": "115", "pubmed_id": "31810255" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-16", "dateModified": "2019-12-16", "datePublished": "2019-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus lutrae" ], "sample_taxid": [ "2078573" ], "sample_host_organism": [ "Lontra canadensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Castril, Granada" ], "sample_host_location_id": [], "data_size": "1.580 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5538742", "Number of Sequences": "44", "Longest Sequences (bp)": "830332", "N50 (bp)": "286655", "Gap Ratio (%)": "0.008486", "GCcontent (%)": "49.8", "Number of CDSs": "4940", "Average Protein Length": "317.5", "Coding Ratio (%)": "85.0", "Number of rRNAs": "10", "Number of tRNAs": "86", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus lutrae", "strain": "strain=N10", "accession": "GCA_009757775.1", "taxid": 2078573, "species_taxid": 2078573, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1823, "total_fragments": 1824, 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