{ "type": "genome", "identifier": "GCF_009758205.1", "organism": "Chitinophaga tropicalis", "title": "Chitinophaga tropicalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_009758205.1", "bioproject": "PRJNA224116", "biosample": "SAMN13508952", "wgs_master": "WRXN00000000.1", "refseq_category": "reference genome", "taxid": "2683588", "species_taxid": "2683588", "organism_name": "Chitinophaga tropicalis", "infraspecific_name": "strain=ysch24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/17", "asm_name": "ASM975820v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_009758205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/758/205/GCF_009758205.1_ASM975820v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7973759", "genome_size_ungapped": "7973759", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_009758205.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6164", "protein_coding_gene_count": "6085", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-17", "dateModified": "2019-12-17", "datePublished": "2019-12-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga tropicalis" ], "sample_taxid": [ "2683588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Viet Nam: Cat Tien National Park" ], "sample_host_location_id": [], "data_size": "2.259 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7973759", "Number of Sequences": "57", "Longest Sequences (bp)": "1430075", "N50 (bp)": "511191", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.6", "Number of CDSs": "6052", "Average Protein Length": "389.8", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga tropicalis", "strain": "strain=ysch24", "accession": "GCA_009758205.1", "taxid": 2683588, "species_taxid": 2683588, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2628, "total_fragments": 2630, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga filiformis", "strain": "strain=DSM 527", "accession": "GCA_900102545.1", "taxid": 104663, "species_taxid": 104663, "relation_to_type": "type", "validated": true, "ani": 79.7509, "matched_fragments": 1025, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga ginsengisoli", "strain": "strain=DSM 18107", "accession": "GCA_003014595.1", "taxid": 363837, "species_taxid": 363837, "relation_to_type": "type", "validated": true, "ani": 79.7127, "matched_fragments": 999, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga pinensis", "strain": "strain=DSM 2588", "accession": "GCA_000024005.1", "taxid": 79329, "species_taxid": 79329, "relation_to_type": "type", "validated": true, "ani": 79.5553, "matched_fragments": 842, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga agri", "strain": "strain=H33E-04", "accession": "GCA_010093065.1", "taxid": 2703787, "species_taxid": 2703787, "relation_to_type": "type", "validated": true, "ani": 79.3671, "matched_fragments": 784, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga rhizophila", "strain": "strain=B61", "accession": "GCA_019492185.1", "taxid": 2866212, "species_taxid": 2866212, "relation_to_type": "type", "validated": true, "ani": 79.2769, "matched_fragments": 754, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga oryziterrae", "strain": "strain=JCM 16595", "accession": "GCA_009758125.1", "taxid": 1031224, "species_taxid": 1031224, "relation_to_type": "type", "validated": true, "ani": 78.9045, "matched_fragments": 726, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga sancti", "strain": "strain=DSM 784", "accession": "GCA_900119105.1", "taxid": 1004, "species_taxid": 1004, "relation_to_type": "type", "validated": true, "ani": 78.6397, "matched_fragments": 602, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga silvisoli", "strain": "strain=K20C18050901", "accession": "GCA_003412465.1", "taxid": 2291814, "species_taxid": 2291814, "relation_to_type": "type", "validated": true, "ani": 78.6024, "matched_fragments": 627, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga rupis", "strain": "strain=DSM 21039", "accession": "GCA_900109685.1", "taxid": 573321, "species_taxid": 573321, "relation_to_type": "type", "validated": true, "ani": 77.7271, "matched_fragments": 506, "total_fragments": 2630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", 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