{
    "type": "genome",
    "identifier": "GCF_009758415.1",
    "organism": "Devosia marina",
    "title": "Devosia marina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Guangdong Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009758415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13503961",
        "wgs_master": "WQRF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2683198",
        "species_taxid": "2683198",
        "organism_name": "Devosia marina",
        "infraspecific_name": "strain=L53-10-65",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/12/17",
        "asm_name": "ASM975841v1",
        "asm_submitter": "Guangdong Academy of Sciences",
        "gbrs_paired_asm": "GCA_009758415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/758/415/GCF_009758415.1_ASM975841v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3868180",
        "genome_size_ungapped": "3868180",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_009758415.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "3785",
        "protein_coding_gene_count": "3681",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-12-17",
    "dateModified": "2019-12-17",
    "datePublished": "2019-12-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Devosia marina"
        ],
        "sample_taxid": [
            "2683198"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: South China Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.086 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3868180",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "1615214",
        "N50 (bp)": "636889",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "3791",
        "Average Protein Length": "303.1",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Devosia marina",
                "strain": "strain=L53-10-65",
                "accession": "GCA_009758415.1",
                "taxid": 2683198,
                "species_taxid": 2683198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1271,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Devosia indica",
                "strain": "strain=IO390501",
                "accession": "GCA_003056405.1",
                "taxid": 2079253,
                "species_taxid": 2079253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4765,
                "matched_fragments": 1001,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia subaequoris",
                "strain": "strain=DSM 23447",
                "accession": "GCA_014197055.1",
                "taxid": 395930,
                "species_taxid": 395930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1107,
                "matched_fragments": 1027,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia subaequoris",
                "strain": "strain=HST3-14",
                "accession": "GCA_024158985.1",
                "taxid": 395930,
                "species_taxid": 395930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1066,
                "matched_fragments": 1020,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia salina",
                "strain": "strain=SCS-3",
                "accession": "GCA_019504385.1",
                "taxid": 2860336,
                "species_taxid": 2860336,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.253,
                "matched_fragments": 883,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia elaeis",
                "strain": "strain=S37",
                "accession": "GCA_001650025.1",
                "taxid": 1770058,
                "species_taxid": 1770058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0268,
                "matched_fragments": 729,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia rhizoryzae",
                "strain": "strain=LEGU1",
                "accession": "GCA_016698665.1",
                "taxid": 2774137,
                "species_taxid": 2774137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0639,
                "matched_fragments": 593,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia beringensis",
                "strain": "strain=S02",
                "accession": "GCA_014926585.1",
                "taxid": 2657486,
                "species_taxid": 2657486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8985,
                "matched_fragments": 651,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Devosia oryziradicis",
                "strain": "strain=G19",
                "accession": "GCA_016698645.1",
                "taxid": 2801335,
                "species_taxid": 2801335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4451,
                "matched_fragments": 587,
                "total_fragments": 1273,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009758415.1",
                "gtdb_species": "s__Devosia marina",
                "ani": 100.0,
                "matched_fragments": 1271,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003056405.1",
                "gtdb_species": "s__Devosia indica",
                "ani": 91.4653,
                "matched_fragments": 1002,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014197055.1",
                "gtdb_species": "s__Devosia subaequoris",
                "ani": 89.0966,
                "matched_fragments": 1028,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001650025.1",
                "gtdb_species": "s__Devosia elaeis",
                "ani": 82.0271,
                "matched_fragments": 728,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016411825.1",
                "gtdb_species": "s__Devosia sp016411825",
                "ani": 81.8997,
                "matched_fragments": 783,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015158295.1",
                "gtdb_species": "s__Devosia sp015158295",
                "ani": 80.91,
                "matched_fragments": 628,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900631955.1",
                "gtdb_species": "s__Devosia sp001899045",
                "ani": 80.8049,
                "matched_fragments": 673,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000969445.1",
                "gtdb_species": "s__Devosia chinhatensis",
                "ani": 80.5817,
                "matched_fragments": 654,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016698665.1",
                "gtdb_species": "s__Devosia sp016698665",
                "ani": 80.0666,
                "matched_fragments": 592,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018828145.1",
                "gtdb_species": "s__Devosia sp018828145",
                "ani": 80.0504,
                "matched_fragments": 702,
                "total_fragments": 1273,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.26,
        "cell_length": 0.157,
        "doubling_h": null,
        "growth_tmp": 26.73,
        "optimum_tmp": 27.125,
        "optimum_ph": 7.393,
        "genome_size": 4123393.25,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.909,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.909,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.09,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Devosia",
        "marina"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}