{
    "type": "genome",
    "identifier": "GCF_009761355.1",
    "organism": "Testudinibacter aquarius",
    "title": "Testudinibacter aquarius",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Copenhagen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_009761355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03737479",
        "wgs_master": "LEKL00000000.1",
        "refseq_category": "na",
        "taxid": "1524974",
        "species_taxid": "1524974",
        "organism_name": "Testudinibacter aquarius",
        "infraspecific_name": "strain=ELNT2X",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/12/17",
        "asm_name": "ASM976135v1",
        "asm_submitter": "University of Copenhagen",
        "gbrs_paired_asm": "GCA_009761355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/761/355/GCF_009761355.1_ASM976135v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2709648",
        "genome_size_ungapped": "2709648",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "83",
        "contig_count": "83",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-18",
        "total_gene_count": "2562",
        "protein_coding_gene_count": "2479",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-12-17",
    "dateModified": "2019-12-17",
    "datePublished": "2019-12-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Testudinibacter aquarius"
        ],
        "sample_taxid": [
            "1524974"
        ],
        "sample_host_organism": [
            "Chelodina longicollis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark"
        ],
        "sample_host_location_id": [],
        "data_size": "0.770 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2709648",
        "Number of Sequences": "83",
        "Longest Sequences (bp)": "157155",
        "N50 (bp)": "70264",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "2467",
        "Average Protein Length": "321.4",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Testudinibacter aquarius",
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                "accession": "GCA_009761355.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Testudinibacter aquarius",
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                "accession": "GCA_004342725.1",
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                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Testudinibacter aquarius",
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                "status": "conclusive"
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                "organism_name": "Pasteurella testudinis",
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                "accession": "GCA_019633665.1",
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                "species_taxid": 761,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pasteurella testudinis",
                "strain": "strain=NCTC12150",
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                "species_taxid": 761,
                "relation_to_type": "type",
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                "ani": 82.3121,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spirabiliibacterium mucosae",
                "strain": "strain=20609_3",
                "accession": "GCA_014884965.1",
                "taxid": 28156,
                "species_taxid": 28156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5799,
                "matched_fragments": 158,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_004342725.1",
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                "matched_fragments": 864,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Chelonobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.20",
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            },
            {
                "accession": "GCA_006228005.1",
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                "matched_fragments": 683,
                "total_fragments": 866,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Chelonobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
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                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900176075.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Chelonobacter",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000772535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Chelonobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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            },
            {
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            },
            {
                "accession": "GCF_002000125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Rodentibacter",
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            },
            {
                "accession": "GCF_001999335.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "growth_tmp": 37.0,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "aquarius"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}